RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 PI3P19957 117 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 RAG2P55895 527 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 NHLH1Q02575 133 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 NHLH2Q02577 135 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 LAIR1Q6GTX8 287 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 GLDNQ6ZMI3 551 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 ARRDC1Q8N5I2 433 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 WBP2Q969T9 261 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 OXGR1Q96P68 337 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 CIB3Q96Q77 187 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 WSB2Q9NYS7 404 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 LAMA4Q16363 1823 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 DDX60Q8IY21 1712 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 PNLIPRP2P54317 469 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 PPP1CBP62140 327 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 MLF2Q15773 248 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 OR5A2Q8NGI9 324 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 RPUSD4Q96CM3 377 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 SPACA5Q96QH8 159 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 TINAGL1Q9GZM7 467 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 KLK11Q9UBX7 282 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 PLCH1Q4KWH8 1693 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 A0A1W2PPH5 198 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 IDSB3KWA1 339 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 TOX3O15405 576 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 ICOSLGO75144 302 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 CBR3O75828 277 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 ST6GAL1P15907 406 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 RPS27P42677 84 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 FAM27D1Q5T7N8 215 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 LEMD1Q68G75 181 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 KIRREL2Q6UWL6 708 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 OR2A1Q8NGT9 310 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 IL22RA2Q969J5 263 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 PACRGQ96M98 296 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 SLCO1C1Q9NYB5 712 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 A4GNTQ9UNA3 340 aa9.27□□□□□ -0.93
LIMCH1-203ENST00000396595 PRRT4C9JH25 899 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 SH2D1BO14796 132 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 WDR1O75083 606 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 AQP8O94778 261 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 ADH4P08319 380 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 COX5AP20674 150 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 CLEC12BQ2HXU8 276 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 ZFP62Q8NB50 900 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 RTN4IP1Q8WWV3 396 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 H1FXQ92522 213 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 SOX7Q9BT81 388 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 RHOFQ9HBH0 211 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 FOXJ3Q9UPW0 622 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 TJP1Q07157 1748 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 SERPINE3A8MV23 424 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 OR8G1Q15617 311 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 TMEM128Q5BJH2 165 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 ZNF738Q8NE65 137 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 RXFP4Q8TDU9 374 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 ELSPBP1Q96BH3 223 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 MRGPRX4Q96LA9 322 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 TAAR9Q96RI9 348 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 TRAF4Q9BUZ4 470 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 EDEM2Q9BV94 578 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 LANCL2Q9NS86 450 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 B9D1Q9UPM9 204 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 KNL1Q8NG31 2342 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 LINC01553A4QN01 128 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 AGERQ15109 404 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 NCMAPQ5T1S8 102 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 ANKRD16Q6P6B7 361 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 DND1Q8IYX4 353 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 OR5M1Q8NGP8 315 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 C11orf40Q8WZ69 217 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 DOK1Q99704 481 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 RSRP1Q9BUV0 290 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 ZNF256Q9Y2P7 627 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 CXorf51AA0A1B0GTR3 108 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 ASPDHA6ND91 283 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 PYCARD-AS1I3L0S3 204 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 CRHP06850 196 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 OR10J1P30954 320 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 PIGPP57054 158 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 TOMM34Q15785 309 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 ZNF468Q5VIY5 522 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 RNASEKQ6P5S7 137 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 RNF165Q6ZSG1 346 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 FA2HQ7L5A8 372 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 LSRQ86X29 649 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 SIRT6Q8N6T7 355 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 OR52B4Q8NGK2 314 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 SLC17A5Q9NRA2 495 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 CACFD1Q9UGQ2 172 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 A0A1W2PNR3 127 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 RNASEK-C17orf49H0YIS7 233 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 NDUFB6O95139 128 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 ARR3P36575 388 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 EMDP50402 254 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 RUNX2Q13950 521 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 FAM53BQ14153 422 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 ZNF718Q3SXZ3 478 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 C11orf87Q6NUJ2 197 aa9.26□□□□□ -0.93
LIMCH1-203ENST00000396595 ZNF355PQ9NSJ1 428 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms