RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 LARP1BQ659C4 914 aaKnown RBP18.63■□□□□ 0.57
CPSF1-213ENST00000620219 NARFQ9UHQ1 456 aa18.63■□□□□ 0.57
CPSF1-213ENST00000620219 CIAO1O76071 339 aa18.63■□□□□ 0.57
CPSF1-213ENST00000620219 CWC22Q9HCG8 908 aaKnown RBP18.63■□□□□ 0.57
CPSF1-213ENST00000620219 MROH5Q6ZUA9 1318 aa18.63■□□□□ 0.57
CPSF1-213ENST00000620219 SALL3Q9BXA9 1300 aa18.63■□□□□ 0.57
CPSF1-213ENST00000620219 GOLGA6L3A6NEY3 463 aa18.63■□□□□ 0.57
CPSF1-213ENST00000620219 FIBPO43427 364 aa18.63■□□□□ 0.57
CPSF1-213ENST00000620219 RBM6P78332 1123 aaKnown RBP18.63■□□□□ 0.57
CPSF1-213ENST00000620219 ANKRD1Q15327 319 aa18.63■□□□□ 0.57
CPSF1-213ENST00000620219 ZNF34Q8IZ26 560 aa18.63■□□□□ 0.57
CPSF1-213ENST00000620219 F8W031 263 aaPredicted RBP18.63■□□□□ 0.57
CPSF1-213ENST00000620219 SLC27A2O14975 620 aa18.63■□□□□ 0.57
CPSF1-213ENST00000620219 ZFYP08048 801 aaPredicted RBP18.63■□□□□ 0.57
CPSF1-213ENST00000620219 AMOTL1Q8IY63 956 aa18.63■□□□□ 0.57
CPSF1-213ENST00000620219 HSPA4P34932 840 aa18.62■□□□□ 0.57
CPSF1-213ENST00000620219 CEBPZQ03701 1054 aaKnown RBP18.62■□□□□ 0.57
CPSF1-213ENST00000620219 CCDC82Q8N4S0 544 aa18.62■□□□□ 0.57
CPSF1-213ENST00000620219 CIZ1Q9ULV3 898 aaPredicted RBP18.62■□□□□ 0.57
CPSF1-213ENST00000620219 KIF3AQ9Y496 699 aa18.62■□□□□ 0.57
CPSF1-213ENST00000620219 PHRF1Q9P1Y6 1649 aaKnown RBP18.62■□□□□ 0.57
CPSF1-213ENST00000620219 ADCK5Q3MIX3 580 aa18.62■□□□□ 0.57
CPSF1-213ENST00000620219 CPLX2Q6PUV4 134 aaKnown RBP18.62■□□□□ 0.57
CPSF1-213ENST00000620219 TTLL5Q6EMB2 1281 aa18.62■□□□□ 0.57
CPSF1-213ENST00000620219 SPATA5Q8NB90 893 aa18.62■□□□□ 0.57
CPSF1-213ENST00000620219 NUP133Q8WUM0 1156 aa18.62■□□□□ 0.57
CPSF1-213ENST00000620219 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.62■□□□□ 0.57
CPSF1-213ENST00000620219 PARP3Q9Y6F1 533 aa18.62■□□□□ 0.57
CPSF1-213ENST00000620219 FAM208AQ9UK61 1670 aaKnown RBP18.61■□□□□ 0.57
CPSF1-213ENST00000620219 PHLPP1O60346 1717 aa18.61■□□□□ 0.57
CPSF1-213ENST00000620219 RBM5P52756 815 aaKnown RBP eCLIP18.61■□□□□ 0.572e-6■□□□□ 9.9
CPSF1-213ENST00000620219 CLEC4GQ6UXB4 293 aa18.61■□□□□ 0.57
CPSF1-213ENST00000620219 CELF1Q92879 486 aaKnown RBP18.61■□□□□ 0.57
CPSF1-213ENST00000620219 LSG1Q9H089 658 aaKnown RBP18.61■□□□□ 0.57
CPSF1-213ENST00000620219 GPAA1O43292 621 aa18.61■□□□□ 0.57
CPSF1-213ENST00000620219 TXNRD1Q16881 649 aa18.61■□□□□ 0.57
CPSF1-213ENST00000620219 CAVIN1Q6NZI2 390 aaKnown RBP18.61■□□□□ 0.57
CPSF1-213ENST00000620219 SLC4A4Q9Y6R1 1079 aa18.61■□□□□ 0.57
CPSF1-213ENST00000620219 MBD4O95243 580 aa18.61■□□□□ 0.57
CPSF1-213ENST00000620219 SCARF1Q14162 830 aa18.61■□□□□ 0.57
CPSF1-213ENST00000620219 CCDC144CPQ8IYA2 1237 aa18.61■□□□□ 0.57
CPSF1-213ENST00000620219 SERPINB2P05120 415 aa18.6■□□□□ 0.57
CPSF1-213ENST00000620219 CASP7P55210 303 aa18.6■□□□□ 0.57
CPSF1-213ENST00000620219 ARMT1Q9H993 441 aa18.6■□□□□ 0.57
CPSF1-213ENST00000620219 BRPF3Q9ULD4 1205 aa18.6■□□□□ 0.57
CPSF1-213ENST00000620219 ZNF532Q9HCE3 1301 aa18.6■□□□□ 0.57
CPSF1-213ENST00000620219 VPS53Q5VIR6 699 aa18.6■□□□□ 0.57
CPSF1-213ENST00000620219 ATP6V1DQ9Y5K8 247 aa18.6■□□□□ 0.57
CPSF1-213ENST00000620219 UFL1O94874 794 aa18.59■□□□□ 0.57
CPSF1-213ENST00000620219 GUCY1B3Q02153 619 aa18.59■□□□□ 0.57
CPSF1-213ENST00000620219 NAA16Q6N069 864 aaPredicted RBP18.59■□□□□ 0.57
CPSF1-213ENST00000620219 ZSCAN31Q96LW9 406 aaPredicted RBP18.59■□□□□ 0.57
CPSF1-213ENST00000620219 LMO7Q8WWI1 1683 aa18.59■□□□□ 0.57
CPSF1-213ENST00000620219 Q6ZUG5 572 aa18.59■□□□□ 0.57
CPSF1-213ENST00000620219 BAG4O95429 457 aaKnown RBP18.59■□□□□ 0.57
CPSF1-213ENST00000620219 GPR101Q96P66 508 aaPredicted RBP18.59■□□□□ 0.57
CPSF1-213ENST00000620219 HMG20BQ9P0W2 317 aa18.59■□□□□ 0.57
CPSF1-213ENST00000620219 HIBADHP31937 336 aaKnown RBP18.59■□□□□ 0.57
CPSF1-213ENST00000620219 AKAP17AQ02040 695 aaKnown RBP18.59■□□□□ 0.57
CPSF1-213ENST00000620219 USP5P45974 858 aa18.58■□□□□ 0.57
CPSF1-213ENST00000620219 SART3Q15020 963 aaKnown RBP18.58■□□□□ 0.56
CPSF1-213ENST00000620219 APPBP2Q92624 585 aa18.58■□□□□ 0.56
CPSF1-213ENST00000620219 CDHR2Q9BYE9 1310 aa18.58■□□□□ 0.56
CPSF1-213ENST00000620219 RANBP6O60518 1105 aaKnown RBP18.58■□□□□ 0.56
CPSF1-213ENST00000620219 RAB3GAP1Q15042 981 aa18.58■□□□□ 0.56
CPSF1-213ENST00000620219 SF3A1Q15459 793 aaKnown RBP18.58■□□□□ 0.56
CPSF1-213ENST00000620219 PIBF1Q8WXW3 757 aa18.58■□□□□ 0.56
CPSF1-213ENST00000620219 GPR108Q9NPR9 543 aa18.58■□□□□ 0.56
CPSF1-213ENST00000620219 NFIXQ14938 502 aa18.57■□□□□ 0.56
CPSF1-213ENST00000620219 HELLSQ9NRZ9 838 aa18.57■□□□□ 0.56
CPSF1-213ENST00000620219 LRRC37A3O60309 1634 aa18.57■□□□□ 0.56
CPSF1-213ENST00000620219 CACNA1FO60840 1977 aa18.57■□□□□ 0.56
CPSF1-213ENST00000620219 GJB2P29033 226 aa18.57■□□□□ 0.56
CPSF1-213ENST00000620219 MCAMP43121 646 aa18.57■□□□□ 0.56
CPSF1-213ENST00000620219 RUFY3Q7L099 469 aa18.57■□□□□ 0.56
CPSF1-213ENST00000620219 FBXO3Q9UK99 471 aa18.57■□□□□ 0.56
CPSF1-213ENST00000620219 ANKRD2Q9GZV1 360 aa18.57■□□□□ 0.56
CPSF1-213ENST00000620219 RIPOR2Q9Y4F9 1068 aa18.57■□□□□ 0.56
CPSF1-213ENST00000620219 CSF1RP07333 972 aa18.56■□□□□ 0.56
CPSF1-213ENST00000620219 UBAC1Q9BSL1 405 aa18.56■□□□□ 0.56
CPSF1-213ENST00000620219 WDR33Q9C0J8 1336 aaKnown RBP18.56■□□□□ 0.56
CPSF1-213ENST00000620219 ZRSR1Q15695 479 aaKnown RBP18.56■□□□□ 0.56
CPSF1-213ENST00000620219 ATP2B1P20020 1258 aa18.55■□□□□ 0.56
CPSF1-213ENST00000620219 OSBP2Q969R2 916 aa18.55■□□□□ 0.56
CPSF1-213ENST00000620219 NTSR2O95665 410 aa18.55■□□□□ 0.56
CPSF1-213ENST00000620219 APOBRQ0VD83 1088 aa18.55■□□□□ 0.56
CPSF1-213ENST00000620219 STK32BQ9NY57 414 aa18.55■□□□□ 0.56
CPSF1-213ENST00000620219 CCDC69A6NI79 296 aa18.55■□□□□ 0.56
CPSF1-213ENST00000620219 DHX16O60231 1041 aaKnown RBP18.55■□□□□ 0.56
CPSF1-213ENST00000620219 HSPD1P10809 573 aaKnown RBP18.55■□□□□ 0.56
CPSF1-213ENST00000620219 MICU3Q86XE3 530 aa18.55■□□□□ 0.56
CPSF1-213ENST00000620219 RBM17Q96I25 401 aaKnown RBP18.55■□□□□ 0.56
CPSF1-213ENST00000620219 IFIT3O14879 490 aaKnown RBP18.54■□□□□ 0.56
CPSF1-213ENST00000620219 PDE6AP16499 860 aa18.54■□□□□ 0.56
CPSF1-213ENST00000620219 RASGRF1Q13972 1273 aa18.54■□□□□ 0.56
CPSF1-213ENST00000620219 ZC3H12CQ9C0D7 883 aaKnown RBP18.54■□□□□ 0.56
CPSF1-213ENST00000620219 GOLGA8BA8MQT2 603 aa18.54■□□□□ 0.56
CPSF1-213ENST00000620219 RXRAP19793 462 aa18.54■□□□□ 0.56
CPSF1-213ENST00000620219 PTMSP20962 102 aa18.54■□□□□ 0.56
CPSF1-213ENST00000620219 PUS7LQ9H0K6 701 aaKnown RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms