RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594		U3KPZ7	1027 aa	Predicted RBP	11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	KDM3B	Q7LBC6	1761 aa		11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	POLR3G	O15318	223 aa	Predicted RBP	11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	POLR3D	P05423	398 aa	Predicted RBP	11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	SFPQ	P23246	707 aa	Known RBP eCLIP	11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	GOLGA8F	Q08AF8	430 aa		11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	GOLGA8DP	Q0D2H9	430 aa		11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	BMS1	Q14692	1282 aa	Known RBP	11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	SF3A1	Q15459	793 aa	Known RBP	11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	NAA16	Q6N069	864 aa	Predicted RBP	11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	MRPS27	Q92552	414 aa	Known RBP	11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	JCAD	Q9P266	1359 aa		11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	DNAI1	Q9UI46	699 aa		11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	HDAC5	Q9UQL6	1122 aa		11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	RNMT	O43148	476 aa	Known RBP	11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	CEBPA	P49715	358 aa	Predicted RBP	11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	MCMDC2	Q4G0Z9	681 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	RAB11FIP4	Q86YS3	637 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	MYD88	Q99836	296 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	FHOD1	Q9Y613	1164 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	MYH15	Q9Y2K3	1946 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	H2AFX	P16104	143 aa	Predicted RBP	11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	LMOD1	P29536	600 aa	Predicted RBP	11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	TNNI3K	Q59H18	835 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	AKAP4	Q5JQC9	854 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	FMR1NB	Q8N0W7	255 aa	Predicted RBP	11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	FAM177A1	Q8N128	213 aa	Predicted RBP	11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	TIGD1	Q96MW7	591 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	CHMP4A	Q9BY43	222 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	OSBPL5	Q9H0X9	879 aa	Predicted RBP	11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	EPC1	Q9H2F5	836 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	TMX1	Q9H3N1	280 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	CLIC4	Q9Y696	253 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	FPGT-TNNI3K	V9GXZ4	949 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	DIP2A	Q14689	1571 aa		11.14	□□□□□ -0.63
PPP4R1-222	ENST00000582594	SEC31A	O94979	1220 aa	Known RBP	11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	C1orf141	Q5JVX7	400 aa		11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	DHX32	Q7L7V1	743 aa	Known RBP	11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	GPHN	Q9NQX3	736 aa	Predicted RBP	11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	UBR1	Q8IWV7	1749 aa		11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	KIF2A	O00139	706 aa	Predicted RBP	11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	DDX58	O95786	925 aa	Known RBP	11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	ATP5J	P18859	108 aa		11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	CDK11B	P21127	795 aa	Known RBP	11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	SLC39A6	Q13433	755 aa		11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	STK38	Q15208	465 aa		11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	LLPH	Q9BRT6	129 aa	Known RBP	11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	L2HGDH	Q9H9P8	463 aa		11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	GJB4	Q9NTQ9	266 aa		11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	KIAA1468	Q9P260	1216 aa		11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	PNMA6A	P0CW24	399 aa	Predicted RBP	11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	PLA2G4A	P47712	749 aa		11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	IP6K1	Q92551	441 aa		11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	RBM33	Q96EV2	1170 aa	Known RBP	11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	RGPD2	P0DJD1	1756 aa		11.13	□□□□□ -0.63
PPP4R1-222	ENST00000582594	PLEKHG1	Q9ULL1	1385 aa		11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	ATP1A3	P13637	1013 aa		11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	CCDC93	Q567U6	631 aa		11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	CCDC150	Q8NCX0	1101 aa		11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	IMPACT	Q9P2X3	320 aa		11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	LAMA4	Q16363	1823 aa		11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	MED1	Q15648	1581 aa	Predicted RBP	11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	MARF1	Q9Y4F3	1742 aa	Known RBP	11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	NEURL1B	A8MQ27	555 aa		11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	GOLIM4	O00461	696 aa		11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	URI1	O94763	535 aa	Predicted RBP	11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	ZBTB9	Q96C00	473 aa		11.12	□□□□□ -0.63
PPP4R1-222	ENST00000582594	PXDN	Q92626	1479 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	PDIA3	P30101	505 aa	Known RBP	11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	NEXN	Q0ZGT2	675 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	XAGE3	Q8WTP9	111 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	UBXN4	Q92575	508 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	NEUROD6	Q96NK8	337 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	EID1	Q9Y6B2	187 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	LTN1	O94822	1766 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	UTY	O14607	1347 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594		E7EWF7	191 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	SLC3A2	P08195	630 aa	Known RBP	11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	FDPS	P14324	419 aa	Known RBP	11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	HNRNPH2	P55795	449 aa	Known RBP	11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	GCKR	Q14397	625 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	PDIA6	Q15084	440 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	TTLL5	Q6EMB2	1281 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	MNS1	Q8NEH6	495 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	NEK11	Q8NG66	645 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	DPF2	Q92785	391 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	CARD6	Q9BX69	1037 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	KCND1	Q9NSA2	647 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	CALCOCO1	Q9P1Z2	691 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	CARMIL3	Q8ND23	1372 aa		11.11	□□□□□ -0.63
PPP4R1-222	ENST00000582594	PSD	A5PKW4	1024 aa	Predicted RBP	11.1	□□□□□ -0.63
PPP4R1-222	ENST00000582594	FANCC	Q00597	558 aa		11.1	□□□□□ -0.63
PPP4R1-222	ENST00000582594	PTPN12	Q05209	780 aa	Known RBP	11.1	□□□□□ -0.63
PPP4R1-222	ENST00000582594	HSP90AA4P	Q58FG1	418 aa		11.1	□□□□□ -0.63
PPP4R1-222	ENST00000582594	ADAL	Q6DHV7	355 aa		11.1	□□□□□ -0.63
PPP4R1-222	ENST00000582594	TMCO3	Q6UWJ1	677 aa		11.1	□□□□□ -0.63
PPP4R1-222	ENST00000582594	COPS6	Q7L5N1	327 aa		11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms