RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MCAMP43121 646 aa24.09■■□□□ 1.45
CLN3-230ENST00000568076 LARP1BQ659C4 914 aaKnown RBP24.09■■□□□ 1.45
CLN3-230ENST00000568076 ATP6V1DQ9Y5K8 247 aa24.09■■□□□ 1.45
CLN3-230ENST00000568076 LAMA4Q16363 1823 aa24.09■■□□□ 1.45
CLN3-230ENST00000568076 PDE8BO95263 885 aa24.09■■□□□ 1.45
CLN3-230ENST00000568076 LRSAM1Q6UWE0 723 aa24.09■■□□□ 1.45
CLN3-230ENST00000568076 FAM43AQ8N2R8 423 aa24.09■■□□□ 1.45
CLN3-230ENST00000568076 GTF3C6Q969F1 213 aa24.09■■□□□ 1.45
CLN3-230ENST00000568076 RBSNQ9H1K0 784 aa24.09■■□□□ 1.45
CLN3-230ENST00000568076 CICQ96RK0 1608 aaPredicted RBP24.08■■□□□ 1.45
CLN3-230ENST00000568076 ZFYP08048 801 aaPredicted RBP24.08■■□□□ 1.45
CLN3-230ENST00000568076 HCLS1P14317 486 aaPredicted RBP24.08■■□□□ 1.45
CLN3-230ENST00000568076 MYH14Q7Z406 1995 aaKnown RBP24.08■■□□□ 1.44
CLN3-230ENST00000568076 KCNQ2O43526 872 aa24.07■■□□□ 1.44
CLN3-230ENST00000568076 DNM1Q05193 864 aaKnown RBP24.07■■□□□ 1.44
CLN3-230ENST00000568076 TTLL5Q6EMB2 1281 aa24.07■■□□□ 1.44
CLN3-230ENST00000568076 CDC37L1Q7L3B6 337 aa24.07■■□□□ 1.44
CLN3-230ENST00000568076 DHX32Q7L7V1 743 aaKnown RBP24.07■■□□□ 1.44
CLN3-230ENST00000568076 BRF1Q92994 677 aa24.07■■□□□ 1.44
CLN3-230ENST00000568076 AKAP11Q9UKA4 1901 aa24.07■■□□□ 1.44
CLN3-230ENST00000568076 E7EWF7 191 aa24.07■■□□□ 1.44
CLN3-230ENST00000568076 HMGB1P09429 215 aaKnown RBP24.07■■□□□ 1.44
CLN3-230ENST00000568076 EXOSC10Q01780 885 aaKnown RBP24.07■■□□□ 1.44
CLN3-230ENST00000568076 LRRFIP1Q32MZ4 808 aaKnown RBP24.07■■□□□ 1.44
CLN3-230ENST00000568076 FAM177BA6PVY3 158 aa24.06■■□□□ 1.44
CLN3-230ENST00000568076 WASHC4Q2M389 1173 aa24.06■■□□□ 1.44
CLN3-230ENST00000568076 ZNF512BQ96KM6 892 aaPredicted RBP24.06■■□□□ 1.44
CLN3-230ENST00000568076 AK7Q96M32 723 aa24.06■■□□□ 1.44
CLN3-230ENST00000568076 PUS7LQ9H0K6 701 aaKnown RBP24.06■■□□□ 1.44
CLN3-230ENST00000568076 FIBPO43427 364 aa24.05■■□□□ 1.44
CLN3-230ENST00000568076 APPBP2Q92624 585 aa24.05■■□□□ 1.44
CLN3-230ENST00000568076 JAK2O60674 1132 aa24.05■■□□□ 1.44
CLN3-230ENST00000568076 PDCP20941 246 aa24.05■■□□□ 1.44
CLN3-230ENST00000568076 UTP14AQ9BVJ6 771 aaKnown RBP24.05■■□□□ 1.44
CLN3-230ENST00000568076 AGXT2Q9BYV1 514 aa24.04■■□□□ 1.44
CLN3-230ENST00000568076 PDIA4P13667 645 aaKnown RBP24.03■■□□□ 1.44
CLN3-230ENST00000568076 HSP90B1P14625 803 aaKnown RBP24.03■■□□□ 1.44
CLN3-230ENST00000568076 FGFR2P21802 821 aa24.03■■□□□ 1.44
CLN3-230ENST00000568076 SCRN1Q12765 414 aa24.03■■□□□ 1.44
CLN3-230ENST00000568076 HELBQ8NG08 1087 aaPredicted RBP24.03■■□□□ 1.44
CLN3-230ENST00000568076 TOM1O60784 492 aa24.03■■□□□ 1.44
CLN3-230ENST00000568076 PHKA1P46020 1223 aa24.03■■□□□ 1.44
CLN3-230ENST00000568076 UBE2HP62256 183 aa24.03■■□□□ 1.44
CLN3-230ENST00000568076 CCDC102BQ68D86 513 aa24.03■■□□□ 1.44
CLN3-230ENST00000568076 RRAGDQ9NQL2 400 aaPredicted RBP24.03■■□□□ 1.44
CLN3-230ENST00000568076 MROH5Q6ZUA9 1318 aa24.02■■□□□ 1.44
CLN3-230ENST00000568076 FERMT3Q86UX7 667 aa24.02■■□□□ 1.44
CLN3-230ENST00000568076 SEC31BQ9NQW1 1179 aa24.02■■□□□ 1.44
CLN3-230ENST00000568076 NTSR2O95665 410 aa24.02■■□□□ 1.43
CLN3-230ENST00000568076 ARID4AP29374 1257 aaPredicted RBP24.02■■□□□ 1.43
CLN3-230ENST00000568076 FGD1P98174 961 aa24.02■■□□□ 1.43
CLN3-230ENST00000568076 PUM3Q15397 648 aaKnown RBP24.02■■□□□ 1.43
CLN3-230ENST00000568076 FAM98CQ17RN3 349 aaKnown RBP24.02■■□□□ 1.43
CLN3-230ENST00000568076 PARP10Q53GL7 1025 aa24.02■■□□□ 1.43
CLN3-230ENST00000568076 SYAP1Q96A49 352 aaPredicted RBP24.02■■□□□ 1.43
CLN3-230ENST00000568076 PIH1D3Q9NQM4 214 aaKnown RBP24.02■■□□□ 1.43
CLN3-230ENST00000568076 DDX60Q8IY21 1712 aaKnown RBP24.01■■□□□ 1.43
CLN3-230ENST00000568076 MYH7P12883 1935 aa24.01■■□□□ 1.43
CLN3-230ENST00000568076 PFKFB2O60825 505 aa24.01■■□□□ 1.43
CLN3-230ENST00000568076 APOBRQ0VD83 1088 aa24.01■■□□□ 1.43
CLN3-230ENST00000568076 LPIN2Q92539 896 aa24.01■■□□□ 1.43
CLN3-230ENST00000568076 FGAP02671 866 aa24■■□□□ 1.43
CLN3-230ENST00000568076 ADD2P35612 726 aa24■■□□□ 1.43
CLN3-230ENST00000568076 SMARCC1Q92922 1105 aaPredicted RBP24■■□□□ 1.43
CLN3-230ENST00000568076 NIP7Q9Y221 180 aaKnown RBP eCLIP24■■□□□ 1.43
CLN3-230ENST00000568076 COL5A3P25940 1745 aaPredicted RBP24■■□□□ 1.43
CLN3-230ENST00000568076 GPAA1O43292 621 aa24■■□□□ 1.43
CLN3-230ENST00000568076 FAM173BQ6P4H8 233 aa24■■□□□ 1.43
CLN3-230ENST00000568076 CHST3Q7LGC8 479 aa24■■□□□ 1.43
CLN3-230ENST00000568076 PPP1R9BQ96SB3 815 aa24■■□□□ 1.43
CLN3-230ENST00000568076 ARAP2Q8WZ64 1704 aa23.99■■□□□ 1.43
CLN3-230ENST00000568076 SNAP23O00161 211 aa23.99■■□□□ 1.43
CLN3-230ENST00000568076 TPRNQ4KMQ1 711 aa23.99■■□□□ 1.43
CLN3-230ENST00000568076 SMARCC2Q8TAQ2 1214 aa23.99■■□□□ 1.43
CLN3-230ENST00000568076 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.99■■□□□ 1.432e-6■■■■■ 40.7
CLN3-230ENST00000568076 CTNNA3Q9UI47 895 aa23.99■■□□□ 1.43
CLN3-230ENST00000568076 HAND2P61296 217 aa23.98■■□□□ 1.43
CLN3-230ENST00000568076 CCDC173Q0VFZ6 552 aa23.98■■□□□ 1.43
CLN3-230ENST00000568076 ATRNO75882 1429 aa23.98■■□□□ 1.43
CLN3-230ENST00000568076 TTF1Q15361 905 aaPredicted RBP23.98■■□□□ 1.43
CLN3-230ENST00000568076 SLC9C2Q5TAH2 1124 aa23.98■■□□□ 1.43
CLN3-230ENST00000568076 LINC00116Q8NCU8 138 aa23.98■■□□□ 1.43
CLN3-230ENST00000568076 BCL9LQ86UU0 1499 aa23.97■■□□□ 1.43
CLN3-230ENST00000568076 CTDNEP1O95476 244 aa23.97■■□□□ 1.43
CLN3-230ENST00000568076 IMMTQ16891 758 aaKnown RBP23.97■■□□□ 1.43
CLN3-230ENST00000568076 CSPP1Q1MSJ5 1256 aa23.97■■□□□ 1.43
CLN3-230ENST00000568076 NSUN7Q8NE18 718 aaKnown RBP23.97■■□□□ 1.43
CLN3-230ENST00000568076 DDX11Q96FC9 970 aa23.97■■□□□ 1.43
CLN3-230ENST00000568076 MYO5AQ9Y4I1 1855 aaKnown RBP23.96■■□□□ 1.43
CLN3-230ENST00000568076 UQCRFS1P1P0C7P4 283 aa23.96■■□□□ 1.43
CLN3-230ENST00000568076 ZSCAN25Q6NSZ9 544 aa23.96■■□□□ 1.43
CLN3-230ENST00000568076 MPHOSPH8Q99549 860 aa23.96■■□□□ 1.43
CLN3-230ENST00000568076 LLPHQ9BRT6 129 aaKnown RBP23.96■■□□□ 1.43
CLN3-230ENST00000568076 KRT85P78386 507 aa23.96■■□□□ 1.43
CLN3-230ENST00000568076 CCDC152Q4G0S7 254 aa23.96■■□□□ 1.43
CLN3-230ENST00000568076 CCDC183Q5T5S1 534 aa23.96■■□□□ 1.43
CLN3-230ENST00000568076 TTC6Q86TZ1 520 aa23.96■■□□□ 1.43
CLN3-230ENST00000568076 FBXL16Q8N461 479 aa23.96■■□□□ 1.43
CLN3-230ENST00000568076 C8orf37Q96NL8 207 aa23.96■■□□□ 1.43
CLN3-230ENST00000568076 BCORQ6W2J9 1755 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms