RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GSDMDP57764 484 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 PSME1Q06323 249 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 ORC3Q9UBD5 711 aaPredicted RBP13.14□□□□□ -0.31
LDLR-208ENST00000558518 GOLGA8BA8MQT2 603 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 TOP1P11387 765 aaKnown RBP13.14□□□□□ -0.31
LDLR-208ENST00000558518 ADKP55263 362 aaKnown RBP13.14□□□□□ -0.31
LDLR-208ENST00000558518 FANCCQ00597 558 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 KLHL10Q6JEL2 608 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 NYAP1Q6ZVC0 841 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 LZTFL1Q9NQ48 299 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 SBNO1A3KN83 1393 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 ADCY9O60503 1353 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 ARHGEF10O15013 1369 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 TMEM232C9JQI7 657 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 MCMDC2Q4G0Z9 681 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 DPF2Q92785 391 aa13.14□□□□□ -0.31
LDLR-208ENST00000558518 ZNF827Q17R98 1081 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 CHMP4CQ96CF2 233 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 U3KPZ7 1027 aaPredicted RBP13.13□□□□□ -0.31
LDLR-208ENST00000558518 CDC42BPGQ6DT37 1551 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 A0A087WZG4 1122 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 KLF18A0A0U1RQI7 1052 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 OAS2P29728 719 aaKnown RBP13.13□□□□□ -0.31
LDLR-208ENST00000558518 PNOCQ13519 176 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 ESCO1Q5FWF5 840 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 TRMT44Q8IYL2 757 aaKnown RBP13.13□□□□□ -0.31
LDLR-208ENST00000558518 ZNF594Q96JF6 807 aaPredicted RBP13.13□□□□□ -0.31
LDLR-208ENST00000558518 HMG20BQ9P0W2 317 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 EID1Q9Y6B2 187 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 ANKRD26Q9UPS8 1709 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 SPTLC2O15270 562 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 ZNF202O95125 648 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 DHX32Q7L7V1 743 aaKnown RBP13.13□□□□□ -0.31
LDLR-208ENST00000558518 CLIC6Q96NY7 704 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 KIAA1468Q9P260 1216 aa13.13□□□□□ -0.31
LDLR-208ENST00000558518 ZC3H6P61129 1189 aaKnown RBP13.12□□□□□ -0.31
LDLR-208ENST00000558518 NBPF11Q86T75 865 aa13.12□□□□□ -0.31
LDLR-208ENST00000558518 USP6P35125 1406 aa13.12□□□□□ -0.31
LDLR-208ENST00000558518 COBLO75128 1261 aa13.12□□□□□ -0.31
LDLR-208ENST00000558518 PLEKHO1Q53GL0 409 aaPredicted RBP13.12□□□□□ -0.31
LDLR-208ENST00000558518 CCDC191Q8NCU4 936 aa13.12□□□□□ -0.31
LDLR-208ENST00000558518 LINS1Q8NG48 757 aa13.12□□□□□ -0.31
LDLR-208ENST00000558518 KAZALD1Q96I82 304 aa13.12□□□□□ -0.31
LDLR-208ENST00000558518 IRX2Q9BZI1 471 aaPredicted RBP13.12□□□□□ -0.31
LDLR-208ENST00000558518 PES1O00541 588 aaKnown RBP13.12□□□□□ -0.31
LDLR-208ENST00000558518 EPB41L2O43491 1005 aaKnown RBP13.12□□□□□ -0.31
LDLR-208ENST00000558518 CTDNEP1O95476 244 aa13.12□□□□□ -0.31
LDLR-208ENST00000558518 LMBR1LQ6UX01 489 aa13.12□□□□□ -0.31
LDLR-208ENST00000558518 CCDC12Q8WUD4 166 aaPredicted RBP13.12□□□□□ -0.31
LDLR-208ENST00000558518 HINFPQ9BQA5 517 aa13.12□□□□□ -0.31
LDLR-208ENST00000558518 CASQ1P31415 396 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 MTX1Q13505 466 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 TNNI3KQ59H18 835 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 WWC2Q6AWC2 1192 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 RALYLQ86SE5 291 aaKnown RBP13.11□□□□□ -0.31
LDLR-208ENST00000558518 PLEKHA4Q9H4M7 779 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 RCOR1Q9UKL0 485 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 HDAC5Q9UQL6 1122 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 FPGT-TNNI3KV9GXZ4 949 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 PLEKHG3A1L390 1219 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 CSB-PGBD3P0DP91 1061 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 SMARCE1Q969G3 411 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 MYL10Q9BUA6 226 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 NLRP2Q9NX02 1062 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 ETF1P62495 437 aaKnown RBP13.11□□□□□ -0.31
LDLR-208ENST00000558518 OLFM4Q6UX06 510 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 NFXL1Q6ZNB6 911 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 MICU3Q86XE3 530 aa13.11□□□□□ -0.31
LDLR-208ENST00000558518 GIGYF1O75420 1035 aaPredicted RBP13.1□□□□□ -0.31
LDLR-208ENST00000558518 SYKP43405 635 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 CCDC150Q8NCX0 1101 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 PHKBQ93100 1093 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 E7EWF7 191 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 TRIM66O15016 1216 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 RHOXF2BP0C7M4 288 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 PLA2G4AP47712 749 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 SYCP1Q15431 976 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 LONRF3Q496Y0 759 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 RHOXF2Q9BQY4 288 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 RABEP2Q9H5N1 569 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 FANCLQ9NW38 375 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 FHOD1Q9Y613 1164 aa13.1□□□□□ -0.31
LDLR-208ENST00000558518 KIF2AO00139 706 aaPredicted RBP13.09□□□□□ -0.31
LDLR-208ENST00000558518 CAVIN2O95810 425 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 PFKFB1P16118 471 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 STX17P56962 302 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 GPS2Q13227 327 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 CCDC102AQ96A19 550 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 TFRCP02786 760 aaKnown RBP13.09□□□□□ -0.31
LDLR-208ENST00000558518 IGKV5-2P06315 115 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 IFIT1P09914 478 aaKnown RBP13.09□□□□□ -0.31
LDLR-208ENST00000558518 PDIA3P30101 505 aaKnown RBP13.09□□□□□ -0.31
LDLR-208ENST00000558518 CDC25BP30305 580 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 NFATC2IPQ8NCF5 419 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 GDAP1L1Q96MZ0 367 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 VPS18Q9P253 973 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 A2ML1A8K2U0 1454 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 ALDH1L1O75891 902 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 ADD1P35611 737 aaKnown RBP13.09□□□□□ -0.31
LDLR-208ENST00000558518 SMC1AQ14683 1233 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms