RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ANO2Q9NQ90 1003 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 DDX19AQ9NUU7 478 aaKnown RBP12.76□□□□□ -0.37
USP3-206ENST00000558157 RGS17Q9UGC6 210 aaPredicted RBP12.76□□□□□ -0.37
USP3-206ENST00000558157 SMC3Q9UQE7 1217 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 AFDNP55196 1824 aaKnown RBP12.75□□□□□ -0.37
USP3-206ENST00000558157 ITPK1Q13572 414 aa12.75□□□□□ -0.37
USP3-206ENST00000558157 TTLL7Q6ZT98 887 aa12.75□□□□□ -0.37
USP3-206ENST00000558157 LUZP1Q86V48 1076 aa12.75□□□□□ -0.37
USP3-206ENST00000558157 LIMCH1Q9UPQ0 1083 aa12.75□□□□□ -0.37
USP3-206ENST00000558157 TUBGCP6Q96RT7 1819 aa12.75□□□□□ -0.37
USP3-206ENST00000558157 LY75O60449 1722 aa12.75□□□□□ -0.37
USP3-206ENST00000558157 PNMA6AP0CW24 399 aaPredicted RBP12.74□□□□□ -0.37
USP3-206ENST00000558157 FILIP1Q7Z7B0 1213 aa12.74□□□□□ -0.37
USP3-206ENST00000558157 RSPH14Q9UHP6 348 aa12.74□□□□□ -0.37
USP3-206ENST00000558157 ZBTB1Q9Y2K1 713 aa12.74□□□□□ -0.37
USP3-206ENST00000558157 SALL3Q9BXA9 1300 aa12.74□□□□□ -0.37
USP3-206ENST00000558157 CASQ1P31415 396 aa12.74□□□□□ -0.37
USP3-206ENST00000558157 DHX8Q14562 1220 aaKnown RBP12.74□□□□□ -0.37
USP3-206ENST00000558157 ANKRD13DQ6ZTN6 518 aa12.74□□□□□ -0.37
USP3-206ENST00000558157 GOLGA6L1Q8N7Z2 621 aa12.74□□□□□ -0.37
USP3-206ENST00000558157 NRBP1Q9UHY1 535 aa12.74□□□□□ -0.37
USP3-206ENST00000558157 ZNF330Q9Y3S2 320 aaPredicted RBP12.74□□□□□ -0.37
USP3-206ENST00000558157 AOX1Q06278 1338 aa12.74□□□□□ -0.37
USP3-206ENST00000558157 ZRANB2O95218 330 aaKnown RBP eCLIP12.73□□□□□ -0.37
USP3-206ENST00000558157 RXRBP28702 533 aa12.73□□□□□ -0.37
USP3-206ENST00000558157 NOL8Q76FK4 1167 aaKnown RBP12.73□□□□□ -0.37
USP3-206ENST00000558157 TTC14Q96N46 770 aa12.73□□□□□ -0.37
USP3-206ENST00000558157 ST7Q9NRC1 585 aa12.73□□□□□ -0.37
USP3-206ENST00000558157 MYH14Q7Z406 1995 aaKnown RBP12.73□□□□□ -0.37
USP3-206ENST00000558157 TPM1P09493 284 aa12.73□□□□□ -0.37
USP3-206ENST00000558157 KRT85P78386 507 aa12.73□□□□□ -0.37
USP3-206ENST00000558157 CWF19L2Q2TBE0 894 aaKnown RBP12.73□□□□□ -0.37
USP3-206ENST00000558157 ANO6Q4KMQ2 910 aa12.73□□□□□ -0.37
USP3-206ENST00000558157 MYD88Q99836 296 aa12.73□□□□□ -0.37
USP3-206ENST00000558157 UPF3BQ9BZI7 483 aaKnown RBP12.73□□□□□ -0.37
USP3-206ENST00000558157 TNMDQ9H2S6 317 aa12.73□□□□□ -0.37
USP3-206ENST00000558157 PSD3Q9NYI0 1048 aa12.73□□□□□ -0.37
USP3-206ENST00000558157 DHX16O60231 1041 aaKnown RBP12.72□□□□□ -0.37
USP3-206ENST00000558157 PLA2G4AP47712 749 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 KCNJ6P48051 423 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 DNM1Q05193 864 aaKnown RBP12.72□□□□□ -0.37
USP3-206ENST00000558157 MAPK8IP2Q13387 824 aaPredicted RBP12.72□□□□□ -0.37
USP3-206ENST00000558157 POTEAQ6S8J7 498 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 CCAR2Q8N163 923 aaKnown RBP12.72□□□□□ -0.37
USP3-206ENST00000558157 PLBD2Q8NHP8 589 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 METTL22Q9BUU2 404 aaPredicted RBP12.72□□□□□ -0.37
USP3-206ENST00000558157 UBXN6Q9BZV1 441 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 USP44Q9H0E7 712 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 MTMR6Q9Y217 621 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 EP400Q96L91 3159 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 ALDH1L1O75891 902 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 IGKV5-2P06315 115 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 GNAI3P08754 354 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 CRKLP46109 303 aaKnown RBP12.72□□□□□ -0.37
USP3-206ENST00000558157 CLCN6P51797 869 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 ICE2Q659A1 982 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 TMCO3Q6UWJ1 677 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 FAM196AQ6ZSG2 479 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 IQUBQ8NA54 791 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 LINS1Q8NG48 757 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 ZBTB3Q9H5J0 574 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 STAP2Q9UGK3 403 aa12.72□□□□□ -0.37
USP3-206ENST00000558157 MYO1CO00159 1063 aa12.71□□□□□ -0.37
USP3-206ENST00000558157 SKILP12757 684 aa12.71□□□□□ -0.37
USP3-206ENST00000558157 KCNQ4P56696 695 aa12.71□□□□□ -0.37
USP3-206ENST00000558157 GSDMDP57764 484 aa12.71□□□□□ -0.37
USP3-206ENST00000558157 AXDND1Q5T1B0 1012 aaPredicted RBP12.71□□□□□ -0.37
USP3-206ENST00000558157 ZSCAN31Q96LW9 406 aaPredicted RBP12.71□□□□□ -0.37
USP3-206ENST00000558157 SH2B1Q9NRF2 756 aaPredicted RBP12.71□□□□□ -0.37
USP3-206ENST00000558157 CCDC87Q9NVE4 849 aa12.71□□□□□ -0.37
USP3-206ENST00000558157 TAF1LQ8IZX4 1826 aa12.71□□□□□ -0.37
USP3-206ENST00000558157 GNAI2P04899 355 aa12.71□□□□□ -0.38
USP3-206ENST00000558157 UBTFL1P0CB47 393 aaPredicted RBP12.71□□□□□ -0.38
USP3-206ENST00000558157 ZNF165P49910 485 aa12.71□□□□□ -0.38
USP3-206ENST00000558157 GTF2A1P52655 376 aaPredicted RBP12.71□□□□□ -0.38
USP3-206ENST00000558157 NEXNQ0ZGT2 675 aa12.71□□□□□ -0.38
USP3-206ENST00000558157 CCDC93Q567U6 631 aa12.71□□□□□ -0.38
USP3-206ENST00000558157 NOM1Q5C9Z4 860 aaKnown RBP12.71□□□□□ -0.38
USP3-206ENST00000558157 INTS5Q6P9B9 1019 aaKnown RBP12.71□□□□□ -0.38
USP3-206ENST00000558157 LINC00116Q8NCU8 138 aa12.71□□□□□ -0.38
USP3-206ENST00000558157 GOLGA5Q8TBA6 731 aa12.71□□□□□ -0.38
USP3-206ENST00000558157 GTF3C6Q969F1 213 aa12.71□□□□□ -0.38
USP3-206ENST00000558157 SRRTQ9BXP5 876 aaKnown RBP12.71□□□□□ -0.38
USP3-206ENST00000558157 NEURL1BA8MQ27 555 aa12.7□□□□□ -0.38
USP3-206ENST00000558157 ZSCAN26Q16670 478 aa12.7□□□□□ -0.38
USP3-206ENST00000558157 CCDC144BQ3MJ40 725 aa12.7□□□□□ -0.38
USP3-206ENST00000558157 SYT10Q6XYQ8 523 aa12.7□□□□□ -0.38
USP3-206ENST00000558157 KRBA2Q6ZNG9 492 aa12.7□□□□□ -0.38
USP3-206ENST00000558157 CCDC144CPQ8IYA2 1237 aa12.7□□□□□ -0.38
USP3-206ENST00000558157 AK7Q96M32 723 aa12.7□□□□□ -0.38
USP3-206ENST00000558157 SCAND2PQ9GZW5 306 aaPredicted RBP12.7□□□□□ -0.38
USP3-206ENST00000558157 CLSTN2Q9H4D0 955 aa12.7□□□□□ -0.38
USP3-206ENST00000558157 LRRFIP2Q9Y608 721 aaKnown RBP12.7□□□□□ -0.38
USP3-206ENST00000558157 NBPF7P0C2Y1 421 aaPredicted RBP12.7□□□□□ -0.38
USP3-206ENST00000558157 KIF6Q6ZMV9 814 aa12.7□□□□□ -0.38
USP3-206ENST00000558157 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.7□□□□□ -0.38
USP3-206ENST00000558157 ANKRD36CQ5JPF3 1778 aa12.69□□□□□ -0.38
USP3-206ENST00000558157 IL6STP40189 918 aaPredicted RBP12.69□□□□□ -0.38
USP3-206ENST00000558157 FBXO18Q8NFZ0 1043 aa12.69□□□□□ -0.38
USP3-206ENST00000558157 PSDA5PKW4 1024 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms