RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ERC1Q8IUD2 1116 aa14.45□□□□□ -0.1
LDLR-205ENST00000557933 IP6K1Q92551 441 aa14.45□□□□□ -0.1
LDLR-205ENST00000557933 ZNF594Q96JF6 807 aaPredicted RBP14.45□□□□□ -0.1
LDLR-205ENST00000557933 DHX40Q8IX18 779 aaKnown RBP14.45□□□□□ -0.1
LDLR-205ENST00000557933 LINS1Q8NG48 757 aa14.45□□□□□ -0.1
LDLR-205ENST00000557933 AXIN2Q9Y2T1 843 aa14.45□□□□□ -0.1
LDLR-205ENST00000557933 COL16A1Q07092 1604 aaPredicted RBP14.44□□□□□ -0.1
LDLR-205ENST00000557933 USP42Q9H9J4 1324 aaKnown RBP14.44□□□□□ -0.1
LDLR-205ENST00000557933 MARCKSP29966 332 aaPredicted RBP14.44□□□□□ -0.1
LDLR-205ENST00000557933 NFATC2IPQ8NCF5 419 aa14.44□□□□□ -0.1
LDLR-205ENST00000557933 KIF18AQ8NI77 898 aa14.44□□□□□ -0.1
LDLR-205ENST00000557933 IFNKQ9P0W0 207 aa14.44□□□□□ -0.1
LDLR-205ENST00000557933 ADD1P35611 737 aaKnown RBP14.44□□□□□ -0.1
LDLR-205ENST00000557933 CCZ1BP86790 482 aa14.44□□□□□ -0.1
LDLR-205ENST00000557933 CCZ1P86791 482 aaPredicted RBP14.44□□□□□ -0.1
LDLR-205ENST00000557933 SNW1Q13573 536 aaKnown RBP14.44□□□□□ -0.1
LDLR-205ENST00000557933 ANKRD1Q15327 319 aa14.44□□□□□ -0.1
LDLR-205ENST00000557933 ARHGEF25Q86VW2 580 aa14.44□□□□□ -0.1
LDLR-205ENST00000557933 NSUN7Q8NE18 718 aaKnown RBP14.44□□□□□ -0.1
LDLR-205ENST00000557933 GTPBP4Q9BZE4 634 aaKnown RBP14.44□□□□□ -0.1
LDLR-205ENST00000557933 ZNF609O15014 1411 aa14.43□□□□□ -0.1
LDLR-205ENST00000557933 ATP1A3P13637 1013 aa14.43□□□□□ -0.1
LDLR-205ENST00000557933 NDUFA8P51970 172 aa14.43□□□□□ -0.1
LDLR-205ENST00000557933 SF3A1Q15459 793 aaKnown RBP14.43□□□□□ -0.1
LDLR-205ENST00000557933 KCNB2Q92953 911 aa14.43□□□□□ -0.1
LDLR-205ENST00000557933 OGFRQ9NZT2 677 aa14.43□□□□□ -0.1
LDLR-205ENST00000557933 DENND2AQ9ULE3 1009 aa14.43□□□□□ -0.1
LDLR-205ENST00000557933 MTX1Q13505 466 aa14.43□□□□□ -0.1
LDLR-205ENST00000557933 ILDR1Q86SU0 546 aaPredicted RBP14.43□□□□□ -0.1
LDLR-205ENST00000557933 ZFP91Q96JP5 570 aaPredicted RBP14.43□□□□□ -0.1
LDLR-205ENST00000557933 AIFM3Q96NN9 605 aa14.43□□□□□ -0.1
LDLR-205ENST00000557933 XPO4Q9C0E2 1151 aaKnown RBP14.43□□□□□ -0.1
LDLR-205ENST00000557933 CLIC4Q9Y696 253 aa14.43□□□□□ -0.1
LDLR-205ENST00000557933 EPB41L2O43491 1005 aaKnown RBP14.42□□□□□ -0.1
LDLR-205ENST00000557933 STX1AQ16623 288 aa14.42□□□□□ -0.1
LDLR-205ENST00000557933 TNNI3KQ59H18 835 aa14.42□□□□□ -0.1
LDLR-205ENST00000557933 DDX41Q9UJV9 622 aaKnown RBP14.42□□□□□ -0.1
LDLR-205ENST00000557933 FPGT-TNNI3KV9GXZ4 949 aa14.42□□□□□ -0.1
LDLR-205ENST00000557933 CEMIPQ8WUJ3 1361 aa14.42□□□□□ -0.1
LDLR-205ENST00000557933 MED23Q9ULK4 1368 aa14.42□□□□□ -0.1
LDLR-205ENST00000557933 GCP02774 474 aa14.42□□□□□ -0.1
LDLR-205ENST00000557933 HOMER1Q86YM7 354 aa14.42□□□□□ -0.1
LDLR-205ENST00000557933 PCDHA7Q9UN72 937 aa14.42□□□□□ -0.1
LDLR-205ENST00000557933 ADAMTS7Q9UKP4 1686 aa14.42□□□□□ -0.1
LDLR-205ENST00000557933 RGPD5Q99666 1765 aa14.42□□□□□ -0.1
LDLR-205ENST00000557933 NEURL1BA8MQ27 555 aa14.42□□□□□ -0.1
LDLR-205ENST00000557933 RBM6P78332 1123 aaKnown RBP14.42□□□□□ -0.1
LDLR-205ENST00000557933 FKBP4Q02790 459 aaKnown RBP eCLIP14.42□□□□□ -0.1
LDLR-205ENST00000557933 PLEKHO1Q53GL0 409 aaPredicted RBP14.42□□□□□ -0.1
LDLR-205ENST00000557933 PHLPP1O60346 1717 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 POLR3GO15318 223 aaPredicted RBP14.41□□□□□ -0.1
LDLR-205ENST00000557933 GCKRQ14397 625 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 PDIA6Q15084 440 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 ZRSR1Q15695 479 aaKnown RBP14.41□□□□□ -0.1
LDLR-205ENST00000557933 AKAP4Q5JQC9 854 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 DDX17Q92841 729 aaKnown RBP14.41□□□□□ -0.1
LDLR-205ENST00000557933 ZNF446Q9NWS9 450 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 CFAP45Q9UL16 551 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 A0A087WZG4 1122 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 UBE2Q2LH0YL09 131 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 PTPN12Q05209 780 aaKnown RBP14.41□□□□□ -0.1
LDLR-205ENST00000557933 NEXNQ0ZGT2 675 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 SPECC1Q5M775 1068 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 LMBR1LQ6UX01 489 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 PI16Q6UXB8 463 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 NBPF11Q86T75 865 aa14.41□□□□□ -0.1
LDLR-205ENST00000557933 CCAR2Q8N163 923 aaKnown RBP14.41□□□□□ -0.1
LDLR-205ENST00000557933 ZNF496Q96IT1 587 aaPredicted RBP14.41□□□□□ -0.1
LDLR-205ENST00000557933 ERBB3P21860 1342 aa14.4□□□□□ -0.1
LDLR-205ENST00000557933 ALDH1L1O75891 902 aa14.4□□□□□ -0.1
LDLR-205ENST00000557933 SLFN14P0C7P3 912 aa14.4□□□□□ -0.1
LDLR-205ENST00000557933 RBM43Q6ZSC3 357 aaKnown RBP14.4□□□□□ -0.1
LDLR-205ENST00000557933 ANKRD24Q8TF21 1146 aa14.4□□□□□ -0.1
LDLR-205ENST00000557933 COL14A1Q05707 1796 aaKnown RBP14.4□□□□□ -0.1
LDLR-205ENST00000557933 E4F1Q66K89 784 aaPredicted RBP14.4□□□□□ -0.1
LDLR-205ENST00000557933 RGPD2P0DJD1 1756 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 HIP1O00291 1037 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 SEC31AO94979 1220 aaKnown RBP14.39□□□□□ -0.11
LDLR-205ENST00000557933 MCMDC2Q4G0Z9 681 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 ARMCX5Q6P1M9 558 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 CEP57L1Q8IYX8 460 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 NLRP2Q9NX02 1062 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 PAXBP1Q9Y5B6 917 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 SRCAPQ6ZRS2 3230 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 GOLGB1Q14789 3259 aaKnown RBP14.39□□□□□ -0.11
LDLR-205ENST00000557933 PXDNLA1KZ92 1463 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 DDX58O95786 925 aaKnown RBP14.39□□□□□ -0.11
LDLR-205ENST00000557933 STK38Q15208 465 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 DNAI1Q9UI46 699 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 PKD1L3Q7Z443 1732 aa14.39□□□□□ -0.11
LDLR-205ENST00000557933 ZSWIM4Q9H7M6 989 aa14.38□□□□□ -0.11
LDLR-205ENST00000557933 WASHC4Q2M389 1173 aa14.38□□□□□ -0.11
LDLR-205ENST00000557933 LRRC24Q50LG9 513 aa14.38□□□□□ -0.11
LDLR-205ENST00000557933 NYAP1Q6ZVC0 841 aa14.38□□□□□ -0.11
LDLR-205ENST00000557933 NKX2-3Q8TAU0 364 aa14.38□□□□□ -0.11
LDLR-205ENST00000557933 DPF2Q92785 391 aa14.38□□□□□ -0.11
LDLR-205ENST00000557933 OVOS2A0A0G2JMS6 1433 aa14.38□□□□□ -0.11
LDLR-205ENST00000557933 PLCH1Q4KWH8 1693 aa14.38□□□□□ -0.11
LDLR-205ENST00000557933 KIF20AO95235 890 aa14.38□□□□□ -0.11
LDLR-205ENST00000557933 FDPSP14324 419 aaKnown RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms