RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 TRIM33Q9UPN9 1127 aa7.71□□□□□ -1.18
CD44-215ENST00000525241 SMNDC1O75940 238 aaKnown RBP eCLIP7.7□□□□□ -1.18
CD44-215ENST00000525241 LDHBP07195 334 aaKnown RBP7.7□□□□□ -1.18
CD44-215ENST00000525241 EAPPQ56P03 285 aaPredicted RBP7.7□□□□□ -1.18
CD44-215ENST00000525241 PI16Q6UXB8 463 aa7.7□□□□□ -1.18
CD44-215ENST00000525241 TMEM102Q8N9M5 508 aaPredicted RBP7.7□□□□□ -1.18
CD44-215ENST00000525241 NXPE3Q969Y0 559 aa7.7□□□□□ -1.18
CD44-215ENST00000525241 MKL2Q9ULH7 1088 aa7.7□□□□□ -1.18
CD44-215ENST00000525241 CNTNAP5Q8WYK1 1306 aa7.7□□□□□ -1.18
CD44-215ENST00000525241 FAM181BA6NEQ2 426 aa7.69□□□□□ -1.18
CD44-215ENST00000525241 PDE2AO00408 941 aaPredicted RBP7.69□□□□□ -1.18
CD44-215ENST00000525241 BAG6P46379 1132 aa7.69□□□□□ -1.18
CD44-215ENST00000525241 ALG1LQ6GMV1 187 aa7.69□□□□□ -1.18
CD44-215ENST00000525241 GDF6Q6KF10 455 aaPredicted RBP7.69□□□□□ -1.18
CD44-215ENST00000525241 BEND7Q8N7W2 519 aaPredicted RBP7.69□□□□□ -1.18
CD44-215ENST00000525241 FBF1Q8TES7 1133 aa7.69□□□□□ -1.18
CD44-215ENST00000525241 TRIM11Q96F44 468 aa7.69□□□□□ -1.18
CD44-215ENST00000525241 TCF12Q99081 682 aa7.69□□□□□ -1.18
CD44-215ENST00000525241 PODXL2Q9NZ53 605 aa7.69□□□□□ -1.18
CD44-215ENST00000525241 ATP2B2Q01814 1243 aa7.68□□□□□ -1.18
CD44-215ENST00000525241 TAGLNQ01995 201 aaKnown RBP7.68□□□□□ -1.18
CD44-215ENST00000525241 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.68□□□□□ -1.18
CD44-215ENST00000525241 CCNJLQ8IV13 435 aa7.68□□□□□ -1.18
CD44-215ENST00000525241 BHLHE41Q9C0J9 482 aaPredicted RBP7.68□□□□□ -1.18
CD44-215ENST00000525241 SUV39H2Q9H5I1 410 aa7.68□□□□□ -1.18
CD44-215ENST00000525241 GNB5O14775 395 aa7.67□□□□□ -1.18
CD44-215ENST00000525241 GADD45BO75293 160 aaPredicted RBP7.67□□□□□ -1.18
CD44-215ENST00000525241 PRPF40AO75400 957 aaKnown RBP7.67□□□□□ -1.18
CD44-215ENST00000525241 MSL1Q68DK7 614 aa7.67□□□□□ -1.18
CD44-215ENST00000525241 IL22RA1Q8N6P7 574 aa7.67□□□□□ -1.18
CD44-215ENST00000525241 SCARF2Q96GP6 870 aaPredicted RBP7.67□□□□□ -1.18
CD44-215ENST00000525241 LACRTQ9GZZ8 138 aa7.67□□□□□ -1.18
CD44-215ENST00000525241 ADAM19Q9H013 955 aa7.67□□□□□ -1.18
CD44-215ENST00000525241 EHD4Q9H223 541 aa7.67□□□□□ -1.18
CD44-215ENST00000525241 LIN7BQ9HAP6 207 aa7.67□□□□□ -1.18
CD44-215ENST00000525241 NLRP2Q9NX02 1062 aa7.67□□□□□ -1.18
CD44-215ENST00000525241 GRM2Q14416 872 aa7.66□□□□□ -1.18
CD44-215ENST00000525241 PODNQ7Z5L7 613 aa7.66□□□□□ -1.18
CD44-215ENST00000525241 CACTIN-AS1Q8N1I8 211 aa7.66□□□□□ -1.18
CD44-215ENST00000525241 RGS22Q8NE09 1264 aa7.66□□□□□ -1.18
CD44-215ENST00000525241 GLIS3Q8NEA6 775 aa7.66□□□□□ -1.18
CD44-215ENST00000525241 PLVAPQ9BX97 442 aa7.66□□□□□ -1.18
CD44-215ENST00000525241 RNF19AQ9NV58 838 aa7.66□□□□□ -1.18
CD44-215ENST00000525241 CCDC9Q9Y3X0 531 aaKnown RBP7.66□□□□□ -1.18
CD44-215ENST00000525241 METTL12A8MUP2 240 aa7.65□□□□□ -1.18
CD44-215ENST00000525241 PTPRAP18433 802 aa7.65□□□□□ -1.18
CD44-215ENST00000525241 CDC27P30260 824 aa7.65□□□□□ -1.18
CD44-215ENST00000525241 GRIA4P48058 902 aa7.65□□□□□ -1.18
CD44-215ENST00000525241 WFDC8Q8IUA0 241 aa7.65□□□□□ -1.18
CD44-215ENST00000525241 DMRTC2Q8IXT2 367 aaPredicted RBP7.65□□□□□ -1.18
CD44-215ENST00000525241 DUSP9Q99956 384 aaKnown RBP7.65□□□□□ -1.18
CD44-215ENST00000525241 BCO2Q9BYV7 579 aa7.65□□□□□ -1.18
CD44-215ENST00000525241 SH2B1Q9NRF2 756 aaPredicted RBP7.65□□□□□ -1.18
CD44-215ENST00000525241 PIK3R2O00459 728 aa7.64□□□□□ -1.19
CD44-215ENST00000525241 FGD1P98174 961 aa7.64□□□□□ -1.19
CD44-215ENST00000525241 SPRED3Q2MJR0 410 aa7.64□□□□□ -1.19
CD44-215ENST00000525241 PRPF40BQ6NWY9 871 aaKnown RBP7.64□□□□□ -1.19
CD44-215ENST00000525241 BSNDQ8WZ55 320 aa7.64□□□□□ -1.19
CD44-215ENST00000525241 BCL2L13Q9BXK5 485 aa7.64□□□□□ -1.19
CD44-215ENST00000525241 OSBPL7Q9BZF2 842 aa7.64□□□□□ -1.19
CD44-215ENST00000525241 ABCB6Q9NP58 842 aa7.64□□□□□ -1.19
CD44-215ENST00000525241 SOX13Q9UN79 622 aa7.64□□□□□ -1.19
CD44-215ENST00000525241 A0A096LPE4 126 aa7.63□□□□□ -1.19
CD44-215ENST00000525241 A0A1W2PPZ6 126 aa7.63□□□□□ -1.19
CD44-215ENST00000525241 EPHA1P21709 976 aa7.63□□□□□ -1.19
CD44-215ENST00000525241 COL8A1P27658 744 aa7.63□□□□□ -1.19
CD44-215ENST00000525241 TRAPPC3LQ5T215 181 aa7.63□□□□□ -1.19
CD44-215ENST00000525241 NXPE4Q6UWF7 544 aa7.63□□□□□ -1.19
CD44-215ENST00000525241 VN1R5Q7Z5H4 357 aa7.63□□□□□ -1.19
CD44-215ENST00000525241 ASAP3Q8TDY4 903 aa7.63□□□□□ -1.19
CD44-215ENST00000525241 MUC3BQ9H195 1237 aa7.63□□□□□ -1.19
CD44-215ENST00000525241 PARP2Q9UGN5 583 aa7.63□□□□□ -1.19
CD44-215ENST00000525241 TRAK1Q9UPV9 953 aa7.63□□□□□ -1.19
CD44-215ENST00000525241 TMEM238LA0A1B0GVL6 79 aa7.62□□□□□ -1.19
CD44-215ENST00000525241 GNA15P30679 374 aa7.62□□□□□ -1.19
CD44-215ENST00000525241 GIPC2Q8TF65 315 aa7.62□□□□□ -1.19
CD44-215ENST00000525241 NOP53Q9NZM5 478 aaKnown RBP7.62□□□□□ -1.19
CD44-215ENST00000525241 SPG7Q9UQ90 795 aa7.62□□□□□ -1.19
CD44-215ENST00000525241 PPME1Q9Y570 386 aa7.62□□□□□ -1.19
CD44-215ENST00000525241 A0A0A0MRY4 1105 aa7.61□□□□□ -1.19
CD44-215ENST00000525241 LINC01387J3KSC0 135 aa7.61□□□□□ -1.19
CD44-215ENST00000525241 GIPC1O14908 333 aa7.61□□□□□ -1.19
CD44-215ENST00000525241 ITPKAP23677 461 aa7.61□□□□□ -1.19
CD44-215ENST00000525241 FRMD6Q96NE9 622 aa7.61□□□□□ -1.19
CD44-215ENST00000525241 SPDYE3A6NKU9 549 aa7.6□□□□□ -1.19
CD44-215ENST00000525241 FAM229AH3BQW9 127 aa7.6□□□□□ -1.19
CD44-215ENST00000525241 H3BRJ5 948 aa7.6□□□□□ -1.19
CD44-215ENST00000525241 DEAF1O75398 565 aaPredicted RBP7.6□□□□□ -1.19
CD44-215ENST00000525241 ZNF16P17020 682 aaPredicted RBP7.6□□□□□ -1.19
CD44-215ENST00000525241 CDC25BP30305 580 aa7.6□□□□□ -1.19
CD44-215ENST00000525241 DAB2P98082 770 aa7.6□□□□□ -1.19
CD44-215ENST00000525241 PTPN12Q05209 780 aaKnown RBP7.6□□□□□ -1.19
CD44-215ENST00000525241 SETDB1Q15047 1291 aa7.6□□□□□ -1.19
CD44-215ENST00000525241 TXNDC11Q6PKC3 985 aa7.6□□□□□ -1.19
CD44-215ENST00000525241 DTWD1Q8N5C7 304 aa7.6□□□□□ -1.19
CD44-215ENST00000525241 SRCIN1Q9C0H9 1055 aa7.6□□□□□ -1.19
CD44-215ENST00000525241 C12orf49Q9H741 205 aa7.6□□□□□ -1.19
CD44-215ENST00000525241 RBM47A0AV96 593 aaKnown RBP7.59□□□□□ -1.19
CD44-215ENST00000525241 FAM177BA6PVY3 158 aa7.59□□□□□ -1.19
CD44-215ENST00000525241 TM4SF5O14894 197 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms