RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 EDC3Q96F86 508 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-209ENST00000494080 A0A1B0GUL7 405 aa18.8■□□□□ 0.6
CCDC88B-209ENST00000494080 GABPB1Q06547 395 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-209ENST00000494080 TNNI3KQ59H18 835 aa18.8■□□□□ 0.6
CCDC88B-209ENST00000494080 DNAJC10Q8IXB1 793 aa18.8■□□□□ 0.6
CCDC88B-209ENST00000494080 CEP89Q96ST8 783 aa18.8■□□□□ 0.6
CCDC88B-209ENST00000494080 FPGT-TNNI3KV9GXZ4 949 aa18.8■□□□□ 0.6
CCDC88B-209ENST00000494080 UBAP1LF5GYI3 381 aa18.8■□□□□ 0.6
CCDC88B-209ENST00000494080 C6orf229H3BNL8 230 aa18.8■□□□□ 0.6
CCDC88B-209ENST00000494080 PROSER3Q2NL68 480 aa18.8■□□□□ 0.6
CCDC88B-209ENST00000494080 SSH3Q8TE77 659 aa18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 SPHKAPQ2M3C7 1700 aa18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 BRD1O95696 1058 aa18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 SSRP1Q08945 709 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 TXLNBQ8N3L3 684 aa18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 RPGRQ92834 1020 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 PHF23Q9BUL5 403 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 SLC26A6Q9BXS9 759 aa18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 IRX3P78415 501 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 EYA2O00167 538 aa18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 KIAA0754O94854 1291 aa18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 APOBRQ0VD83 1088 aa18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 ISM2Q6H9L7 571 aa18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 ANKRD18AQ8IVF6 992 aa18.79■□□□□ 0.6
CCDC88B-209ENST00000494080 CYP7A1P22680 504 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 KIF4BQ2VIQ3 1234 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 RUFY3Q7L099 469 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 SIRT2Q8IXJ6 389 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 ZHX3Q9H4I2 956 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 A2ML1A8K2U0 1454 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 RNF113AO15541 343 aaKnown RBP18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 KLHL10Q6JEL2 608 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 ARHGEF25Q86VW2 580 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 ZNF219Q9P2Y4 722 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 PHKG2P15735 406 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 RFC4P35249 363 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 GNG11P61952 73 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 ZBTB9Q96C00 473 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 SNX14Q9Y5W7 946 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 SSBP05455 408 aaKnown RBP eCLIP18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 BEND3Q5T5X7 828 aa18.78■□□□□ 0.6
CCDC88B-209ENST00000494080 E9PCH4 1651 aa18.77■□□□□ 0.6
CCDC88B-209ENST00000494080 CLASP1Q7Z460 1538 aa18.77■□□□□ 0.6
CCDC88B-209ENST00000494080 PRAMEF22A3QJZ6 481 aa18.77■□□□□ 0.6
CCDC88B-209ENST00000494080 UTP14AQ9BVJ6 771 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-209ENST00000494080 ZNF444Q8N0Y2 327 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-209ENST00000494080 MADDQ8WXG6 1647 aa18.77■□□□□ 0.59
CCDC88B-209ENST00000494080 KRT18P05783 430 aaKnown RBP18.77■□□□□ 0.59
CCDC88B-209ENST00000494080 MAGEC2Q9UBF1 373 aaPredicted RBP18.77■□□□□ 0.59
CCDC88B-209ENST00000494080 DACH1Q9UI36 760 aa18.77■□□□□ 0.59
CCDC88B-209ENST00000494080 PRC1O43663 620 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 ARFGAP3Q9NP61 516 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 SLC4A4Q9Y6R1 1079 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 NEURL1BA8MQ27 555 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 USP8P40818 1118 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 GPATCH11Q8N954 259 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 IBTKQ9P2D0 1353 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 CATIPQ7Z7H3 387 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 SETDB2Q96T68 719 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 MPHOSPH10O00566 681 aaKnown RBP18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 TOM1O60784 492 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 EPS15P42566 896 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 FAM173BQ6P4H8 233 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 SYT10Q6XYQ8 523 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 AOPEPQ8N6M6 819 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 MIGA1Q8NAN2 632 aa18.76■□□□□ 0.59
CCDC88B-209ENST00000494080 KIF24Q5T7B8 1368 aa18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 TSPY2A6NKD2 308 aa18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 EPB41L2O43491 1005 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 CCDC191Q8NCU4 936 aa18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 CCDC150Q8NCX0 1101 aa18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 NLRP3Q96P20 1036 aa18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 GBP3Q9H0R5 595 aa18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 ZBTB43O43298 467 aa18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 UTP14CQ5TAP6 766 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 EAF2Q96CJ1 260 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 ZSCAN16Q9H4T2 348 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 ELF2Q15723 593 aa18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 C10orf67Q8IYJ2 551 aa18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 CEP131Q9UPN4 1083 aa18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 TMEM94Q12767 1356 aa18.75■□□□□ 0.59
CCDC88B-209ENST00000494080 RAD50Q92878 1312 aa18.74■□□□□ 0.59
CCDC88B-209ENST00000494080 MCM6Q14566 821 aa18.74■□□□□ 0.59
CCDC88B-209ENST00000494080 DHX32Q7L7V1 743 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-209ENST00000494080 CRACR2AQ9BSW2 395 aa18.74■□□□□ 0.59
CCDC88B-209ENST00000494080 RXRAP19793 462 aa18.74■□□□□ 0.59
CCDC88B-209ENST00000494080 CNNM3Q8NE01 707 aa18.74■□□□□ 0.59
CCDC88B-209ENST00000494080 ERO1AQ96HE7 468 aa18.74■□□□□ 0.59
CCDC88B-209ENST00000494080 PALD1Q9ULE6 856 aa18.74■□□□□ 0.59
CCDC88B-209ENST00000494080 KIF5CO60282 957 aa18.74■□□□□ 0.59
CCDC88B-209ENST00000494080 ITGA6P23229 1130 aa18.74■□□□□ 0.59
CCDC88B-209ENST00000494080 WTAPQ15007 396 aa18.73■□□□□ 0.59
CCDC88B-209ENST00000494080 TTLL7Q6ZT98 887 aa18.73■□□□□ 0.59
CCDC88B-209ENST00000494080 ALG1Q9BT22 464 aa18.73■□□□□ 0.59
CCDC88B-209ENST00000494080 GLI2P10070 1586 aa18.73■□□□□ 0.59
CCDC88B-209ENST00000494080 SLC27A2O14975 620 aa18.73■□□□□ 0.59
CCDC88B-209ENST00000494080 NLRP5P59047 1200 aa18.73■□□□□ 0.59
CCDC88B-209ENST00000494080 ZNF287Q9HBT7 754 aa18.73■□□□□ 0.59
CCDC88B-209ENST00000494080 STIM1Q13586 685 aa18.72■□□□□ 0.59
CCDC88B-209ENST00000494080 CPLX3Q8WVH0 158 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 236.6 ms