RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-211ENST00000466538 MEI1Q5TIA1 1274 aa6.98□□□□□ -1.29
CDC42BPA-211ENST00000466538 DTHD1Q6ZMT9 781 aa6.98□□□□□ -1.29
CDC42BPA-211ENST00000466538 CACTIN-AS1Q8N1I8 211 aa6.98□□□□□ -1.29
CDC42BPA-211ENST00000466538 TTC9Q92623 222 aa6.98□□□□□ -1.29
CDC42BPA-211ENST00000466538 CNTNAP3BQ96NU0 1288 aa6.98□□□□□ -1.29
CDC42BPA-211ENST00000466538 CNTNAP3Q9BZ76 1288 aa6.98□□□□□ -1.29
CDC42BPA-211ENST00000466538 FRRS1LQ9P0K9 344 aa6.98□□□□□ -1.29
CDC42BPA-211ENST00000466538 GGT7Q9UJ14 662 aa6.98□□□□□ -1.29
CDC42BPA-211ENST00000466538 SMNDC1O75940 238 aaKnown RBP eCLIP6.97□□□□□ -1.29
CDC42BPA-211ENST00000466538 PWP1Q13610 501 aa6.97□□□□□ -1.29
CDC42BPA-211ENST00000466538 SV2BQ7L1I2 683 aa6.97□□□□□ -1.29
CDC42BPA-211ENST00000466538 ZNF654Q8IZM8 581 aa6.97□□□□□ -1.29
CDC42BPA-211ENST00000466538 SLC16A10Q8TF71 515 aa6.97□□□□□ -1.29
CDC42BPA-211ENST00000466538 RSRP1Q9BUV0 290 aa6.97□□□□□ -1.29
CDC42BPA-211ENST00000466538 OXCT2Q9BYC2 517 aaPredicted RBP6.97□□□□□ -1.29
CDC42BPA-211ENST00000466538 CEP44Q9C0F1 390 aa6.97□□□□□ -1.29
CDC42BPA-211ENST00000466538 KLF15Q9UIH9 416 aa6.97□□□□□ -1.29
CDC42BPA-211ENST00000466538 GDF2Q9UK05 429 aaPredicted RBP6.97□□□□□ -1.29
CDC42BPA-211ENST00000466538 A0A096LPE4 126 aa6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 A0A1W2PPZ6 126 aa6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 ALAS2P22557 587 aa6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 MLLT1Q03111 559 aaPredicted RBP6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 NAALADL2Q58DX5 795 aa6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 HFE2Q6ZVN8 426 aa6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 FAM35AQ86V20 835 aa6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 MICALL1Q8N3F8 863 aa6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 GPR161Q8N6U8 529 aaKnown RBP6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 MDFIQ99750 246 aa6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 RASSF4Q9H2L5 321 aa6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 DDX41Q9UJV9 622 aaKnown RBP6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 SLC6A14Q9UN76 642 aa6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 TTF2Q9UNY4 1162 aaKnown RBP6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 AKAP2Q9Y2D5 859 aa6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.96□□□□□ -1.3
CDC42BPA-211ENST00000466538 ELOA3CA0A087WX78 387 aaPredicted RBP6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 ELOA3DA6NLF2 546 aaPredicted RBP6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 TRPA1O75762 1119 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 ACPPP15309 386 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 EIF2AK2P19525 551 aaKnown RBP6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 ADH7P40394 386 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 GRIA4P48058 902 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 TBC1D8BQ0IIM8 1120 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 ELOA3BQ3SY89 546 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 ELMSAN1Q6PJG2 1045 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 ERMP1Q7Z2K6 904 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 USP48Q86UV5 1035 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 GOLGA6L1Q8N7Z2 621 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 SLC43A3Q8NBI5 491 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 ELOA3Q8NG57 546 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 BSNDQ8WZ55 320 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 PLD4Q96BZ4 506 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 POP1Q99575 1024 aaKnown RBP6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 ADAM19Q9H013 955 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 CCSER2Q9H7U1 834 aa6.95□□□□□ -1.3
CDC42BPA-211ENST00000466538 TERTO14746 1132 aaKnown RBP6.94□□□□□ -1.3
CDC42BPA-211ENST00000466538 CPB1P15086 417 aa6.94□□□□□ -1.3
CDC42BPA-211ENST00000466538 SRSF11Q05519 484 aaKnown RBP6.94□□□□□ -1.3
CDC42BPA-211ENST00000466538 GNL2Q13823 731 aaKnown RBP6.94□□□□□ -1.3
CDC42BPA-211ENST00000466538 CCDC85BQ15834 202 aaPredicted RBP6.94□□□□□ -1.3
CDC42BPA-211ENST00000466538 SPRED3Q2MJR0 410 aa6.94□□□□□ -1.3
CDC42BPA-211ENST00000466538 CEP135Q66GS9 1140 aa6.94□□□□□ -1.3
CDC42BPA-211ENST00000466538 ZNF787Q6DD87 383 aa6.94□□□□□ -1.3
CDC42BPA-211ENST00000466538 RELL1Q8IUW5 271 aa6.94□□□□□ -1.3
CDC42BPA-211ENST00000466538 SRA1Q9HD15 236 aaKnown RBP6.94□□□□□ -1.3
CDC42BPA-211ENST00000466538 IGF1RP08069 1367 aa6.94□□□□□ -1.3
CDC42BPA-211ENST00000466538 FAM177BA6PVY3 158 aa6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 NEURL1BA8MQ27 555 aa6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 PTPRAP18433 802 aa6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 ATP11AP98196 1134 aa6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 NFX1Q12986 1120 aaKnown RBP6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 PERM1Q5SV97 790 aa6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 FCHSD1Q86WN1 690 aa6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 ASAP3Q8TDY4 903 aa6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 DRC1Q96MC2 740 aa6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 HHIPQ96QV1 700 aa6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 COL25A1Q9BXS0 654 aaPredicted RBP6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 ZNF576Q9H609 170 aa6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 GGA1Q9UJY5 639 aa6.93□□□□□ -1.3
CDC42BPA-211ENST00000466538 METTL12A8MUP2 240 aa6.92□□□□□ -1.3
CDC42BPA-211ENST00000466538 EIF4EBP3O60516 100 aaPredicted RBP6.92□□□□□ -1.3
CDC42BPA-211ENST00000466538 RACK1P63244 317 aaKnown RBP6.92□□□□□ -1.3
CDC42BPA-211ENST00000466538 SF3A1Q15459 793 aaKnown RBP6.92□□□□□ -1.3
CDC42BPA-211ENST00000466538 SLCO4C1Q6ZQN7 724 aa6.92□□□□□ -1.3
CDC42BPA-211ENST00000466538 SREK1Q8WXA9 508 aaKnown RBP6.92□□□□□ -1.3
CDC42BPA-211ENST00000466538 IRF7Q92985 503 aa6.92□□□□□ -1.3
CDC42BPA-211ENST00000466538 LPIN3Q9BQK8 851 aa6.92□□□□□ -1.3
CDC42BPA-211ENST00000466538 SMG9Q9H0W8 520 aaKnown RBP6.92□□□□□ -1.3
CDC42BPA-211ENST00000466538 CLEC4MQ9H2X3 399 aaPredicted RBP6.92□□□□□ -1.3
CDC42BPA-211ENST00000466538 RGS9O75916 674 aaPredicted RBP6.91□□□□□ -1.3
CDC42BPA-211ENST00000466538 MAP3K10Q02779 954 aa6.91□□□□□ -1.3
CDC42BPA-211ENST00000466538 PPP2R3AQ06190 1150 aa6.91□□□□□ -1.3
CDC42BPA-211ENST00000466538 ZNF394Q53GI3 561 aa6.91□□□□□ -1.3
CDC42BPA-211ENST00000466538 NECAB3Q96P71 396 aaPredicted RBP6.91□□□□□ -1.3
CDC42BPA-211ENST00000466538 SEC31BQ9NQW1 1179 aa6.91□□□□□ -1.3
CDC42BPA-211ENST00000466538 LRRC4BQ9NT99 713 aa6.91□□□□□ -1.3
CDC42BPA-211ENST00000466538 SOX13Q9UN79 622 aa6.91□□□□□ -1.3
CDC42BPA-211ENST00000466538 PSAPL1Q6NUJ1 521 aa6.9□□□□□ -1.3
CDC42BPA-211ENST00000466538 KANK3Q6NY19 840 aa6.9□□□□□ -1.3
CDC42BPA-211ENST00000466538 VPS37DQ86XT2 251 aa6.9□□□□□ -1.3
CDC42BPA-211ENST00000466538 DDX54Q8TDD1 881 aaKnown RBP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms