RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PLEKHM2Q8IWE5 1019 aa17.37■□□□□ 0.37
SKA1-202ENST00000398452 EAF2Q96CJ1 260 aaPredicted RBP17.37■□□□□ 0.37
SKA1-202ENST00000398452 CREBZFQ9NS37 354 aa17.37■□□□□ 0.37
SKA1-202ENST00000398452 TTC41PQ6P2S7 1318 aa17.37■□□□□ 0.37
SKA1-202ENST00000398452 A0A1B0GUL7 405 aa17.36■□□□□ 0.37
SKA1-202ENST00000398452 PPEF1O14829 653 aaPredicted RBP17.36■□□□□ 0.37
SKA1-202ENST00000398452 PDE1AP54750 535 aa17.36■□□□□ 0.37
SKA1-202ENST00000398452 LPIN2Q92539 896 aa17.36■□□□□ 0.37
SKA1-202ENST00000398452 ECHDC1Q9NTX5 307 aa17.36■□□□□ 0.37
SKA1-202ENST00000398452 ANKIB1Q9P2G1 1089 aa17.36■□□□□ 0.37
SKA1-202ENST00000398452 MINPP1Q9UNW1 487 aa17.36■□□□□ 0.37
SKA1-202ENST00000398452 AOX1Q06278 1338 aa17.36■□□□□ 0.37
SKA1-202ENST00000398452 C10orf71Q711Q0 1435 aa17.36■□□□□ 0.37
SKA1-202ENST00000398452 TNRC6CQ9HCJ0 1690 aaKnown RBP17.36■□□□□ 0.37
SKA1-202ENST00000398452 GLRX3O76003 335 aaKnown RBP17.35■□□□□ 0.37
SKA1-202ENST00000398452 HELBQ8NG08 1087 aaPredicted RBP17.35■□□□□ 0.37
SKA1-202ENST00000398452 CHRNA5P30532 468 aa17.34■□□□□ 0.37
SKA1-202ENST00000398452 TTC39AQ5SRH9 613 aa17.34■□□□□ 0.37
SKA1-202ENST00000398452 OTUD7AQ8TE49 926 aaPredicted RBP17.34■□□□□ 0.37
SKA1-202ENST00000398452 OSBPL3Q9H4L5 887 aa17.34■□□□□ 0.37
SKA1-202ENST00000398452 STAP2Q9UGK3 403 aa17.34■□□□□ 0.37
SKA1-202ENST00000398452 ZNF609O15014 1411 aa17.33■□□□□ 0.36
SKA1-202ENST00000398452 TAF5LO75529 589 aa17.33■□□□□ 0.36
SKA1-202ENST00000398452 CLCN6P51797 869 aa17.33■□□□□ 0.36
SKA1-202ENST00000398452 TIMM10P62072 90 aa17.33■□□□□ 0.36
SKA1-202ENST00000398452 UBE4AQ14139 1066 aa17.33■□□□□ 0.36
SKA1-202ENST00000398452 SP8Q8IXZ3 490 aa17.33■□□□□ 0.36
SKA1-202ENST00000398452 XDHP47989 1333 aa17.32■□□□□ 0.36
SKA1-202ENST00000398452 TRIM6-TRIM34B2RNG4 842 aa17.32■□□□□ 0.36
SKA1-202ENST00000398452 CAVIN4Q5BKX8 364 aa17.32■□□□□ 0.36
SKA1-202ENST00000398452 TTC22Q5TAA0 569 aa17.32■□□□□ 0.36
SKA1-202ENST00000398452 VPS37DQ86XT2 251 aa17.32■□□□□ 0.36
SKA1-202ENST00000398452 XAGE2Q96GT9 111 aa17.32■□□□□ 0.36
SKA1-202ENST00000398452 DBNDD2Q9BQY9 259 aa17.32■□□□□ 0.36
SKA1-202ENST00000398452 GNL3LQ9NVN8 582 aaKnown RBP17.32■□□□□ 0.36
SKA1-202ENST00000398452 NSFL1CQ9UNZ2 370 aaKnown RBP17.32■□□□□ 0.36
SKA1-202ENST00000398452 LEMD3Q9Y2U8 911 aa17.32■□□□□ 0.36
SKA1-202ENST00000398452 KIF13BQ9NQT8 1826 aa17.31■□□□□ 0.36
SKA1-202ENST00000398452 KCNA3P22001 575 aa17.31■□□□□ 0.36
SKA1-202ENST00000398452 ATP2B4P23634 1241 aa17.31■□□□□ 0.36
SKA1-202ENST00000398452 BMP2KLQ5H9B9 411 aa17.31■□□□□ 0.36
SKA1-202ENST00000398452 CASC1Q6TDU7 716 aa17.31■□□□□ 0.36
SKA1-202ENST00000398452 VGLL2Q8N8G2 317 aa17.31■□□□□ 0.36
SKA1-202ENST00000398452 PIM2Q9P1W9 311 aa17.31■□□□□ 0.36
SKA1-202ENST00000398452 DBNLQ9UJU6 430 aaKnown RBP17.31■□□□□ 0.36
SKA1-202ENST00000398452 ATP6V0A2Q9Y487 856 aa17.31■□□□□ 0.36
SKA1-202ENST00000398452 KIAA1551Q9HCM1 1747 aa17.3■□□□□ 0.36
SKA1-202ENST00000398452 UQCRFS1P1P0C7P4 283 aa17.3■□□□□ 0.36
SKA1-202ENST00000398452 DALRD3Q5D0E6 543 aaKnown RBP17.3■□□□□ 0.36
SKA1-202ENST00000398452 CC2D2BQ6DHV5 1058 aa17.3■□□□□ 0.36
SKA1-202ENST00000398452 CNTROBQ8N137 903 aa17.3■□□□□ 0.36
SKA1-202ENST00000398452 TTLL6Q8N841 843 aa17.3■□□□□ 0.36
SKA1-202ENST00000398452 TLR7Q9NYK1 1049 aaKnown RBP17.3■□□□□ 0.36
SKA1-202ENST00000398452 GGA1Q9UJY5 639 aa17.3■□□□□ 0.36
SKA1-202ENST00000398452 ANKRD31Q8N7Z5 1873 aa17.29■□□□□ 0.36
SKA1-202ENST00000398452 ZNF804BA4D1E1 1349 aa17.29■□□□□ 0.36
SKA1-202ENST00000398452 SALL3Q9BXA9 1300 aa17.29■□□□□ 0.36
SKA1-202ENST00000398452 EIF5BO60841 1220 aaKnown RBP17.29■□□□□ 0.36
SKA1-202ENST00000398452 TSHZ3Q63HK5 1081 aa17.29■□□□□ 0.36
SKA1-202ENST00000398452 PRPF40BQ6NWY9 871 aaKnown RBP17.29■□□□□ 0.36
SKA1-202ENST00000398452 RILPL2Q969X0 211 aa17.29■□□□□ 0.36
SKA1-202ENST00000398452 SPEF2Q9C093 1822 aa17.28■□□□□ 0.36
SKA1-202ENST00000398452 C6orf229H3BNL8 230 aa17.28■□□□□ 0.36
SKA1-202ENST00000398452 UFL1O94874 794 aa17.28■□□□□ 0.36
SKA1-202ENST00000398452 ATP5JP18859 108 aa17.28■□□□□ 0.36
SKA1-202ENST00000398452 FGFR2P21802 821 aa17.28■□□□□ 0.36
SKA1-202ENST00000398452 GRIPAP1Q4V328 841 aa17.28■□□□□ 0.36
SKA1-202ENST00000398452 SOGA3Q5TF21 947 aa17.28■□□□□ 0.36
SKA1-202ENST00000398452 DPP8Q6V1X1 898 aaPredicted RBP17.28■□□□□ 0.36
SKA1-202ENST00000398452 MPNDQ8N594 471 aa17.28■□□□□ 0.36
SKA1-202ENST00000398452 BOLA2Q9H3K6 86 aa17.28■□□□□ 0.36
SKA1-202ENST00000398452 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.28■□□□□ 0.36
SKA1-202ENST00000398452 FRAT2O75474 233 aaPredicted RBP17.27■□□□□ 0.36
SKA1-202ENST00000398452 ADORA1P30542 326 aa17.27■□□□□ 0.36
SKA1-202ENST00000398452 GPSM2P81274 684 aa17.27■□□□□ 0.36
SKA1-202ENST00000398452 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.27■□□□□ 0.36
SKA1-202ENST00000398452 EYA3Q99504 573 aa17.27■□□□□ 0.36
SKA1-202ENST00000398452 G3V3G9 751 aa17.26■□□□□ 0.35
SKA1-202ENST00000398452 LRRFIP1Q32MZ4 808 aaKnown RBP17.26■□□□□ 0.35
SKA1-202ENST00000398452 DCAF8Q5TAQ9 597 aa17.26■□□□□ 0.35
SKA1-202ENST00000398452 C9orf131Q5VYM1 1079 aa17.26■□□□□ 0.35
SKA1-202ENST00000398452 CCDC102BQ68D86 513 aa17.26■□□□□ 0.35
SKA1-202ENST00000398452 PI4K2BQ8TCG2 481 aa17.26■□□□□ 0.35
SKA1-202ENST00000398452 DNAJC2Q99543 621 aaKnown RBP17.26■□□□□ 0.35
SKA1-202ENST00000398452 PODXL2Q9NZ53 605 aa17.26■□□□□ 0.35
SKA1-202ENST00000398452 ZNF804AQ7Z570 1209 aa17.25■□□□□ 0.35
SKA1-202ENST00000398452 SUPT20HQ8NEM7 779 aa17.25■□□□□ 0.35
SKA1-202ENST00000398452 EVI5LQ96CN4 794 aa17.25■□□□□ 0.35
SKA1-202ENST00000398452 CDC45O75419 566 aa17.24■□□□□ 0.35
SKA1-202ENST00000398452 GSPT1P15170 499 aaKnown RBP17.24■□□□□ 0.35
SKA1-202ENST00000398452 SDSP20132 328 aa17.24■□□□□ 0.35
SKA1-202ENST00000398452 HIBADHP31937 336 aaKnown RBP17.24■□□□□ 0.35
SKA1-202ENST00000398452 FKBP4Q02790 459 aaKnown RBP eCLIP17.24■□□□□ 0.35
SKA1-202ENST00000398452 CCDC93Q567U6 631 aa17.24■□□□□ 0.35
SKA1-202ENST00000398452 ZNF512BQ96KM6 892 aaPredicted RBP17.24■□□□□ 0.35
SKA1-202ENST00000398452 ZC3H12CQ9C0D7 883 aaKnown RBP17.24■□□□□ 0.35
SKA1-202ENST00000398452 TAF1P21675 1872 aa17.24■□□□□ 0.35
SKA1-202ENST00000398452 BRCA1P38398 1863 aaKnown RBP17.23■□□□□ 0.35
SKA1-202ENST00000398452 SNAP23O00161 211 aa17.23■□□□□ 0.35
SKA1-202ENST00000398452 HIP1O00291 1037 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms