RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SLC10A5Q5PT55 438 aa30.13■■■□□ 2.41
SHOX2-201ENST00000389589 TBC1D9BQ66K14 1250 aa30.13■■■□□ 2.41
SHOX2-201ENST00000389589 ARID4AP29374 1257 aaPredicted RBP30.12■■■□□ 2.41
SHOX2-201ENST00000389589 BLOC1S2Q6QNY1 142 aa30.12■■■□□ 2.41
SHOX2-201ENST00000389589 ALDH8A1Q9H2A2 487 aaPredicted RBP30.12■■■□□ 2.41
SHOX2-201ENST00000389589 CPA1P15085 419 aa30.11■■■□□ 2.41
SHOX2-201ENST00000389589 MCAMP43121 646 aa30.11■■■□□ 2.41
SHOX2-201ENST00000389589 MAST3O60307 1309 aa30.11■■■□□ 2.41
SHOX2-201ENST00000389589 CCDC102BQ68D86 513 aa30.11■■■□□ 2.41
SHOX2-201ENST00000389589 SETDB2Q96T68 719 aa30.11■■■□□ 2.41
SHOX2-201ENST00000389589 DDX24Q9GZR7 859 aaKnown RBP eCLIP30.11■■■□□ 2.41
SHOX2-201ENST00000389589 SH2B1Q9NRF2 756 aaPredicted RBP30.11■■■□□ 2.41
SHOX2-201ENST00000389589 C4AP0C0L4 1744 aa30.11■■■□□ 2.41
SHOX2-201ENST00000389589 ZSCAN25Q6NSZ9 544 aa30.1■■■□□ 2.41
SHOX2-201ENST00000389589 GTF2E1P29083 439 aaPredicted RBP30.1■■■□□ 2.41
SHOX2-201ENST00000389589 ANKRD1Q15327 319 aa30.1■■■□□ 2.41
SHOX2-201ENST00000389589 HELBQ8NG08 1087 aaPredicted RBP30.1■■■□□ 2.41
SHOX2-201ENST00000389589 GOLGA6L22H0YM25 854 aa30.09■■■□□ 2.41
SHOX2-201ENST00000389589 RPS6KB1P23443 525 aa30.08■■■□□ 2.41
SHOX2-201ENST00000389589 BICDL1Q6ZP65 573 aa30.08■■■□□ 2.41
SHOX2-201ENST00000389589 SRP68Q9UHB9 627 aaKnown RBP30.08■■■□□ 2.41
SHOX2-201ENST00000389589 ZSCAN21Q9Y5A6 473 aaPredicted RBP30.08■■■□□ 2.41
SHOX2-201ENST00000389589 BRWD3Q6RI45 1802 aa30.08■■■□□ 2.41
SHOX2-201ENST00000389589 A0A1B0GUL6 1792 aa30.08■■■□□ 2.41
SHOX2-201ENST00000389589 BAG4O95429 457 aaKnown RBP30.07■■■□□ 2.4
SHOX2-201ENST00000389589 APPBP2Q92624 585 aa30.07■■■□□ 2.4
SHOX2-201ENST00000389589 ARHGEF1Q92888 912 aaKnown RBP30.07■■■□□ 2.4
SHOX2-201ENST00000389589 PHKA1P46020 1223 aa30.07■■■□□ 2.4
SHOX2-201ENST00000389589 PKP1Q13835 747 aa30.07■■■□□ 2.4
SHOX2-201ENST00000389589 SLFNL1Q499Z3 407 aa30.07■■■□□ 2.4
SHOX2-201ENST00000389589 HSPD1P10809 573 aaKnown RBP30.06■■■□□ 2.4
SHOX2-201ENST00000389589 PI16Q6UXB8 463 aa30.06■■■□□ 2.4
SHOX2-201ENST00000389589 FAM196AQ6ZSG2 479 aa30.06■■■□□ 2.4
SHOX2-201ENST00000389589 ANKRD18AQ8IVF6 992 aa30.06■■■□□ 2.4
SHOX2-201ENST00000389589 OSBP2Q969R2 916 aa30.06■■■□□ 2.4
SHOX2-201ENST00000389589 MYO5AQ9Y4I1 1855 aaKnown RBP30.06■■■□□ 2.4
SHOX2-201ENST00000389589 M0R2C6 588 aa30.05■■■□□ 2.4
SHOX2-201ENST00000389589 TRAK2O60296 914 aa30.05■■■□□ 2.4
SHOX2-201ENST00000389589 CYP21A2P08686 494 aa30.05■■■□□ 2.4
SHOX2-201ENST00000389589 WASHC4Q2M389 1173 aa30.05■■■□□ 2.4
SHOX2-201ENST00000389589 SMIM5Q71RC9 77 aa30.05■■■□□ 2.4
SHOX2-201ENST00000389589 LAMA4Q16363 1823 aa30.05■■■□□ 2.4
SHOX2-201ENST00000389589 TRAPPC3LQ5T215 181 aa30.05■■■□□ 2.4
SHOX2-201ENST00000389589 NBPF5PQ86XG9 351 aaPredicted RBP30.05■■■□□ 2.4
SHOX2-201ENST00000389589 NEK1Q96PY6 1258 aa30.05■■■□□ 2.4
SHOX2-201ENST00000389589 ZDHHC9Q9Y397 364 aa30.05■■■□□ 2.4
SHOX2-201ENST00000389589 TAF6LQ9Y6J9 622 aa30.05■■■□□ 2.4
SHOX2-201ENST00000389589 CHRNDQ07001 517 aa30.04■■■□□ 2.4
SHOX2-201ENST00000389589 DOCK2Q92608 1830 aa30.04■■■□□ 2.4
SHOX2-201ENST00000389589 TPTE2Q6XPS3 522 aa30.03■■■□□ 2.4
SHOX2-201ENST00000389589 RFC4P35249 363 aa30.03■■■□□ 2.4
SHOX2-201ENST00000389589 SKOR2Q2VWA4 1001 aaPredicted RBP30.03■■■□□ 2.4
SHOX2-201ENST00000389589 TAF1P21675 1872 aa30.03■■■□□ 2.4
SHOX2-201ENST00000389589 BRD1O95696 1058 aa30.02■■■□□ 2.4
SHOX2-201ENST00000389589 HMGB1P09429 215 aaKnown RBP30.02■■■□□ 2.4
SHOX2-201ENST00000389589 ADRA2BP18089 450 aa30.02■■■□□ 2.4
SHOX2-201ENST00000389589 BSDC1Q9NW68 430 aaPredicted RBP30.02■■■□□ 2.4
SHOX2-201ENST00000389589 C3orf67Q6ZVT6 689 aa30.02■■■□□ 2.4
SHOX2-201ENST00000389589 NLRP3Q96P20 1036 aa30.02■■■□□ 2.4
SHOX2-201ENST00000389589 UBR3Q6ZT12 1888 aa30.01■■■□□ 2.4
SHOX2-201ENST00000389589 ADD2P35612 726 aa30.01■■■□□ 2.39
SHOX2-201ENST00000389589 KRT27Q7Z3Y8 459 aa30.01■■■□□ 2.39
SHOX2-201ENST00000389589 CTNNA3Q9UI47 895 aa30.01■■■□□ 2.39
SHOX2-201ENST00000389589 SPATA5Q8NB90 893 aa30■■■□□ 2.39
SHOX2-201ENST00000389589 LARP6Q9BRS8 491 aaKnown RBP30■■■□□ 2.39
SHOX2-201ENST00000389589 COL4A1P02462 1669 aa30■■■□□ 2.39
SHOX2-201ENST00000389589 UBE3CQ15386 1083 aa30■■■□□ 2.39
SHOX2-201ENST00000389589 LARGE1O95461 756 aa29.99■■■□□ 2.39
SHOX2-201ENST00000389589 SLC27A3Q5K4L6 730 aa29.99■■■□□ 2.39
SHOX2-201ENST00000389589 AMIGO3Q86WK7 504 aa29.99■■■□□ 2.39
SHOX2-201ENST00000389589 PIH1D3Q9NQM4 214 aaKnown RBP29.99■■■□□ 2.39
SHOX2-201ENST00000389589 SMC3Q9UQE7 1217 aa29.99■■■□□ 2.39
SHOX2-201ENST00000389589 ME3Q16798 604 aa29.98■■■□□ 2.39
SHOX2-201ENST00000389589 SLC9C2Q5TAH2 1124 aa29.98■■■□□ 2.39
SHOX2-201ENST00000389589 LRRC4BQ9NT99 713 aa29.98■■■□□ 2.39
SHOX2-201ENST00000389589 TPCN1Q9ULQ1 816 aa29.98■■■□□ 2.39
SHOX2-201ENST00000389589 WDR33Q9C0J8 1336 aaKnown RBP29.98■■■□□ 2.39
SHOX2-201ENST00000389589 PUS7LQ9H0K6 701 aaKnown RBP29.97■■■□□ 2.39
SHOX2-201ENST00000389589 HMGB2P26583 209 aaKnown RBP29.97■■■□□ 2.39
SHOX2-201ENST00000389589 TOB2Q14106 344 aaPredicted RBP29.97■■■□□ 2.39
SHOX2-201ENST00000389589 CCDC83Q8IWF9 413 aa29.97■■■□□ 2.39
SHOX2-201ENST00000389589 IDH1O75874 414 aaKnown RBP29.96■■■□□ 2.39
SHOX2-201ENST00000389589 RASGRF1Q13972 1273 aa29.96■■■□□ 2.39
SHOX2-201ENST00000389589 UBE4AQ14139 1066 aa29.96■■■□□ 2.39
SHOX2-201ENST00000389589 SNAP23O00161 211 aa29.95■■■□□ 2.39
SHOX2-201ENST00000389589 PHF14O94880 888 aa29.95■■■□□ 2.39
SHOX2-201ENST00000389589 CARMIL3Q8ND23 1372 aa29.95■■■□□ 2.39
SHOX2-201ENST00000389589 GPAA1O43292 621 aa29.95■■■□□ 2.38
SHOX2-201ENST00000389589 COL9A3Q14050 684 aaPredicted RBP29.95■■■□□ 2.38
SHOX2-201ENST00000389589 MCTP1Q6DN14 999 aa29.94■■■□□ 2.38
SHOX2-201ENST00000389589 STOX1Q6ZVD7 989 aa29.94■■■□□ 2.38
SHOX2-201ENST00000389589 PDE6AP16499 860 aa29.94■■■□□ 2.38
SHOX2-201ENST00000389589 MAP3K12Q12852 859 aa29.94■■■□□ 2.38
SHOX2-201ENST00000389589 DHX32Q7L7V1 743 aaKnown RBP29.94■■■□□ 2.38
SHOX2-201ENST00000389589 TCEANC2Q96MN5 208 aa29.94■■■□□ 2.38
SHOX2-201ENST00000389589 MINPP1Q9UNW1 487 aa29.94■■■□□ 2.38
SHOX2-201ENST00000389589 BCAMP50895 628 aa29.93■■■□□ 2.38
SHOX2-201ENST00000389589 IMMTQ16891 758 aaKnown RBP29.93■■■□□ 2.38
SHOX2-201ENST00000389589 ZNF532Q9HCE3 1301 aa29.92■■■□□ 2.38
SHOX2-201ENST00000389589 RPS8P62241 208 aaKnown RBP29.92■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms