RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 KRT32Q14532 448 aa21.59■■□□□ 1.05
CCDC3-201ENST00000378825 ERCC6LQ2NKX8 1250 aa21.59■■□□□ 1.05
CCDC3-201ENST00000378825 TERF2Q15554 542 aa21.59■■□□□ 1.05
CCDC3-201ENST00000378825 PTPN21Q16825 1174 aa21.59■■□□□ 1.05
CCDC3-201ENST00000378825 PFKFB2O60825 505 aa21.58■■□□□ 1.05
CCDC3-201ENST00000378825 FAM160A1Q05DH4 1040 aa21.58■■□□□ 1.05
CCDC3-201ENST00000378825 ISM2Q6H9L7 571 aa21.58■■□□□ 1.05
CCDC3-201ENST00000378825 XAGE3Q8WTP9 111 aa21.58■■□□□ 1.05
CCDC3-201ENST00000378825 DDX21Q9NR30 783 aaKnown RBP eCLIP21.58■■□□□ 1.05
CCDC3-201ENST00000378825 ATP5JP18859 108 aa21.58■■□□□ 1.05
CCDC3-201ENST00000378825 PTPN12Q05209 780 aaKnown RBP21.58■■□□□ 1.05
CCDC3-201ENST00000378825 GCKRQ14397 625 aa21.58■■□□□ 1.05
CCDC3-201ENST00000378825 CHRNA2Q15822 529 aa21.58■■□□□ 1.05
CCDC3-201ENST00000378825 RAB11FIP4Q86YS3 637 aa21.58■■□□□ 1.05
CCDC3-201ENST00000378825 KRT222Q8N1A0 295 aa21.58■■□□□ 1.05
CCDC3-201ENST00000378825 NFATC2IPQ8NCF5 419 aa21.58■■□□□ 1.05
CCDC3-201ENST00000378825 PCDHA7Q9UN72 937 aa21.58■■□□□ 1.05
CCDC3-201ENST00000378825 ERICH4A6NGS2 130 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 GABPB1Q06547 395 aaPredicted RBP21.57■■□□□ 1.04
CCDC3-201ENST00000378825 ARMCX5Q6P1M9 558 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 SYT10Q6XYQ8 523 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 COPS6Q7L5N1 327 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 ANO10Q9NW15 660 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 TAOK2Q9UL54 1235 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 HEG1Q9ULI3 1381 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 NDUFA8P51970 172 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 MCMDC2Q4G0Z9 681 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 XPO4Q9C0E2 1151 aaKnown RBP21.57■■□□□ 1.04
CCDC3-201ENST00000378825 LMO7Q8WWI1 1683 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 CAVIN2O95810 425 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 RAPGEF4Q8WZA2 1011 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 SDF4Q9BRK5 362 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 IFNKQ9P0W0 207 aa21.57■■□□□ 1.04
CCDC3-201ENST00000378825 U3KPZ7 1027 aaPredicted RBP21.57■■□□□ 1.04
CCDC3-201ENST00000378825 ATP5J2-PTCD1G3V325 749 aa21.56■■□□□ 1.04
CCDC3-201ENST00000378825 PTCD1O75127 700 aaKnown RBP21.56■■□□□ 1.04
CCDC3-201ENST00000378825 SMC2O95347 1197 aa21.56■■□□□ 1.04
CCDC3-201ENST00000378825 RFX5P48382 616 aaPredicted RBP21.56■■□□□ 1.04
CCDC3-201ENST00000378825 CEP57L1Q8IYX8 460 aa21.56■■□□□ 1.04
CCDC3-201ENST00000378825 POLR3DP05423 398 aaPredicted RBP21.56■■□□□ 1.04
CCDC3-201ENST00000378825 CSB-PGBD3P0DP91 1061 aa21.56■■□□□ 1.04
CCDC3-201ENST00000378825 TTLL5Q6EMB2 1281 aa21.56■■□□□ 1.04
CCDC3-201ENST00000378825 UBE3BQ7Z3V4 1068 aa21.56■■□□□ 1.04
CCDC3-201ENST00000378825 TMC6Q7Z403 805 aa21.56■■□□□ 1.04
CCDC3-201ENST00000378825 ERO1AQ96HE7 468 aa21.56■■□□□ 1.04
CCDC3-201ENST00000378825 CTAGE5O15320 804 aa21.55■■□□□ 1.04
CCDC3-201ENST00000378825 NEMFO60524 1076 aa21.55■■□□□ 1.04
CCDC3-201ENST00000378825 SLU7O95391 586 aaKnown RBP21.55■■□□□ 1.04
CCDC3-201ENST00000378825 DDX58O95786 925 aaKnown RBP21.55■■□□□ 1.04
CCDC3-201ENST00000378825 NAA16Q6N069 864 aaPredicted RBP21.55■■□□□ 1.04
CCDC3-201ENST00000378825 FMR1NBQ8N0W7 255 aaPredicted RBP21.55■■□□□ 1.04
CCDC3-201ENST00000378825 CHMP4AQ9BY43 222 aa21.55■■□□□ 1.04
CCDC3-201ENST00000378825 GORABQ5T7V8 394 aa21.55■■□□□ 1.04
CCDC3-201ENST00000378825 ZNF790Q6PG37 636 aa21.55■■□□□ 1.04
CCDC3-201ENST00000378825 DHX32Q7L7V1 743 aaKnown RBP21.55■■□□□ 1.04
CCDC3-201ENST00000378825 PPP1R13BQ96KQ4 1090 aa21.55■■□□□ 1.04
CCDC3-201ENST00000378825 CLIC4Q9Y696 253 aa21.55■■□□□ 1.04
CCDC3-201ENST00000378825 LAMA4Q16363 1823 aa21.54■■□□□ 1.04
CCDC3-201ENST00000378825 GOLIM4O00461 696 aa21.54■■□□□ 1.04
CCDC3-201ENST00000378825 FDPSP14324 419 aaKnown RBP21.54■■□□□ 1.04
CCDC3-201ENST00000378825 SLIT3O75094 1523 aa21.54■■□□□ 1.04
CCDC3-201ENST00000378825 HDAC5Q9UQL6 1122 aa21.54■■□□□ 1.04
CCDC3-201ENST00000378825 C1orf167Q5SNV9 1468 aa21.54■■□□□ 1.04
CCDC3-201ENST00000378825 NEDD4P46934 1319 aa21.53■■□□□ 1.04
CCDC3-201ENST00000378825 C19orf44Q9H6X5 657 aa21.53■■□□□ 1.04
CCDC3-201ENST00000378825 ZNF142P52746 1687 aaPredicted RBP21.53■■□□□ 1.04
CCDC3-201ENST00000378825 MYH15Q9Y2K3 1946 aa21.53■■□□□ 1.04
CCDC3-201ENST00000378825 GOLGA8FQ08AF8 430 aa21.53■■□□□ 1.04
CCDC3-201ENST00000378825 GOLGA8DPQ0D2H9 430 aa21.53■■□□□ 1.04
CCDC3-201ENST00000378825 FAM53CQ9NYF3 392 aa21.53■■□□□ 1.04
CCDC3-201ENST00000378825 RGPD5Q99666 1765 aa21.53■■□□□ 1.04
CCDC3-201ENST00000378825 PDIA3P30101 505 aaKnown RBP21.52■■□□□ 1.04
CCDC3-201ENST00000378825 MRPS27Q92552 414 aaKnown RBP21.52■■□□□ 1.04
CCDC3-201ENST00000378825 ZNF496Q96IT1 587 aaPredicted RBP21.52■■□□□ 1.04
CCDC3-201ENST00000378825 HAUS7Q99871 368 aa21.52■■□□□ 1.04
CCDC3-201ENST00000378825 COPRSQ9NQ92 184 aa21.52■■□□□ 1.04
CCDC3-201ENST00000378825 NCAPD2Q15021 1401 aa21.52■■□□□ 1.04
CCDC3-201ENST00000378825 SALL1Q9NSC2 1324 aa21.52■■□□□ 1.04
CCDC3-201ENST00000378825 ATP1A3P13637 1013 aa21.51■■□□□ 1.03
CCDC3-201ENST00000378825 EXOSC10Q01780 885 aaKnown RBP21.51■■□□□ 1.03
CCDC3-201ENST00000378825 NEXNQ0ZGT2 675 aa21.51■■□□□ 1.03
CCDC3-201ENST00000378825 LLPHQ9BRT6 129 aaKnown RBP21.51■■□□□ 1.03
CCDC3-201ENST00000378825 E7EWF7 191 aa21.51■■□□□ 1.03
CCDC3-201ENST00000378825 FANCGO15287 622 aa21.51■■□□□ 1.03
CCDC3-201ENST00000378825 TIMM10P62072 90 aa21.51■■□□□ 1.03
CCDC3-201ENST00000378825 NEUROD6Q96NK8 337 aa21.51■■□□□ 1.03
CCDC3-201ENST00000378825 OSBPL5Q9H0X9 879 aaPredicted RBP21.51■■□□□ 1.03
CCDC3-201ENST00000378825 SLC52A2Q9HAB3 445 aa21.51■■□□□ 1.03
CCDC3-201ENST00000378825 LMOD1P29536 600 aaPredicted RBP21.5■■□□□ 1.03
CCDC3-201ENST00000378825 CARMIL3Q8ND23 1372 aa21.5■■□□□ 1.03
CCDC3-201ENST00000378825 ZNF396Q96N95 335 aaPredicted RBP21.5■■□□□ 1.03
CCDC3-201ENST00000378825 PHKG2P15735 406 aa21.49■■□□□ 1.03
CCDC3-201ENST00000378825 ATF3P18847 181 aa21.49■■□□□ 1.03
CCDC3-201ENST00000378825 KBTBD3Q8NAB2 608 aa21.49■■□□□ 1.03
CCDC3-201ENST00000378825 METTL22Q9BUU2 404 aaPredicted RBP21.49■■□□□ 1.03
CCDC3-201ENST00000378825 KIAA1468Q9P260 1216 aa21.49■■□□□ 1.03
CCDC3-201ENST00000378825 PHRF1Q9P1Y6 1649 aaKnown RBP21.49■■□□□ 1.03
CCDC3-201ENST00000378825 MRC1P22897 1456 aa21.49■■□□□ 1.03
CCDC3-201ENST00000378825 TATP17735 454 aaPredicted RBP21.49■■□□□ 1.03
CCDC3-201ENST00000378825 CLCN6P51797 869 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms