RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 NOGQ13253 232 aa18.49■□□□□ 0.55
PRPF40A-201ENST00000354363 FKBP5Q13451 457 aaPredicted RBP18.49■□□□□ 0.55
PRPF40A-201ENST00000354363 SULF1Q8IWU6 871 aa18.49■□□□□ 0.55
PRPF40A-201ENST00000354363 C2orf69Q8N8R5 385 aa18.49■□□□□ 0.55
PRPF40A-201ENST00000354363 A0A1B0GUL6 1792 aa18.48■□□□□ 0.55
PRPF40A-201ENST00000354363 USP17L8P0C7I0 530 aa18.48■□□□□ 0.55
PRPF40A-201ENST00000354363 ZEB1P37275 1124 aaPredicted RBP18.48■□□□□ 0.55
PRPF40A-201ENST00000354363 IGHMBP2P38935 993 aaKnown RBP18.48■□□□□ 0.55
PRPF40A-201ENST00000354363 SCARF1Q14162 830 aa18.48■□□□□ 0.55
PRPF40A-201ENST00000354363 RGMBQ6NW40 437 aa18.48■□□□□ 0.55
PRPF40A-201ENST00000354363 EXOSC9Q06265 439 aaKnown RBP18.47■□□□□ 0.55
PRPF40A-201ENST00000354363 FAM161AQ3B820 660 aa18.47■□□□□ 0.55
PRPF40A-201ENST00000354363 ANGEL2Q5VTE6 544 aaKnown RBP18.47■□□□□ 0.55
PRPF40A-201ENST00000354363 LINS1Q8NG48 757 aa18.47■□□□□ 0.55
PRPF40A-201ENST00000354363 ABHD8Q96I13 439 aa18.47■□□□□ 0.55
PRPF40A-201ENST00000354363 MYH16Q9H6N6 1097 aa18.47■□□□□ 0.55
PRPF40A-201ENST00000354363 MYOZ2Q9NPC6 264 aa18.47■□□□□ 0.55
PRPF40A-201ENST00000354363 ZNF316A6NFI3 1004 aaPredicted RBP18.46■□□□□ 0.55
PRPF40A-201ENST00000354363 FAM155AB1AL88 458 aaPredicted RBP18.46■□□□□ 0.55
PRPF40A-201ENST00000354363 CSF1RP07333 972 aa18.46■□□□□ 0.55
PRPF40A-201ENST00000354363 ITGA6P23229 1130 aa18.46■□□□□ 0.55
PRPF40A-201ENST00000354363 CDCA5Q96FF9 252 aa18.46■□□□□ 0.55
PRPF40A-201ENST00000354363 LEMD3Q9Y2U8 911 aa18.46■□□□□ 0.55
PRPF40A-201ENST00000354363 TXNRD3Q86VQ6 643 aa18.45■□□□□ 0.54
PRPF40A-201ENST00000354363 DACT2Q5SW24 774 aa18.45■□□□□ 0.54
PRPF40A-201ENST00000354363 MXD3Q9BW11 206 aa18.45■□□□□ 0.54
PRPF40A-201ENST00000354363 COA1Q9GZY4 146 aa18.45■□□□□ 0.54
PRPF40A-201ENST00000354363 SPINK5Q9NQ38 1064 aaPredicted RBP18.45■□□□□ 0.54
PRPF40A-201ENST00000354363 PAPPA2Q9BXP8 1791 aa18.44■□□□□ 0.54
PRPF40A-201ENST00000354363 CCDC102AQ96A19 550 aa18.44■□□□□ 0.54
PRPF40A-201ENST00000354363 MPHOSPH8Q99549 860 aa18.44■□□□□ 0.54
PRPF40A-201ENST00000354363 PITPNM2Q9BZ72 1349 aa18.44■□□□□ 0.54
PRPF40A-201ENST00000354363 ZNF157P51786 506 aaPredicted RBP18.43■□□□□ 0.54
PRPF40A-201ENST00000354363 STRIP1Q5VSL9 837 aa18.43■□□□□ 0.54
PRPF40A-201ENST00000354363 FBXW7Q969H0 707 aa18.43■□□□□ 0.54
PRPF40A-201ENST00000354363 ANKRD2Q9GZV1 360 aa18.43■□□□□ 0.54
PRPF40A-201ENST00000354363 ZNF804BA4D1E1 1349 aa18.43■□□□□ 0.54
PRPF40A-201ENST00000354363 F6X3S4 739 aa18.42■□□□□ 0.54
PRPF40A-201ENST00000354363 KLRK1P26718 216 aa18.42■□□□□ 0.54
PRPF40A-201ENST00000354363 CHRNDQ07001 517 aa18.41■□□□□ 0.54
PRPF40A-201ENST00000354363 NBPF9Q3BBW0 867 aa18.41■□□□□ 0.54
PRPF40A-201ENST00000354363 BEND3Q5T5X7 828 aa18.41■□□□□ 0.54
PRPF40A-201ENST00000354363 MYO3BQ8WXR4 1341 aa18.41■□□□□ 0.54
PRPF40A-201ENST00000354363 ANKRD18BA2A2Z9 1011 aa18.41■□□□□ 0.54
PRPF40A-201ENST00000354363 SLC10A3P09131 477 aa18.41■□□□□ 0.54
PRPF40A-201ENST00000354363 FOXO4P98177 505 aa18.41■□□□□ 0.54
PRPF40A-201ENST00000354363 KIF23Q02241 960 aaPredicted RBP18.41■□□□□ 0.54
PRPF40A-201ENST00000354363 SCAF8Q9UPN6 1271 aaKnown RBP18.41■□□□□ 0.54
PRPF40A-201ENST00000354363 TTLL5Q6EMB2 1281 aa18.4■□□□□ 0.54
PRPF40A-201ENST00000354363 FKBP1BP68106 108 aa18.39■□□□□ 0.53
PRPF40A-201ENST00000354363 FAM9BQ8IZU0 186 aa18.39■□□□□ 0.53
PRPF40A-201ENST00000354363 OGFOD1Q8N543 542 aa18.39■□□□□ 0.53
PRPF40A-201ENST00000354363 ECM29Q5VYK3 1845 aa18.39■□□□□ 0.53
PRPF40A-201ENST00000354363 IRS2Q9Y4H2 1338 aa18.38■□□□□ 0.53
PRPF40A-201ENST00000354363 WNT10BO00744 389 aa18.38■□□□□ 0.53
PRPF40A-201ENST00000354363 KCNJ4P48050 445 aa18.38■□□□□ 0.53
PRPF40A-201ENST00000354363 SNAP23O00161 211 aa18.38■□□□□ 0.53
PRPF40A-201ENST00000354363 MMP14P50281 582 aa18.38■□□□□ 0.53
PRPF40A-201ENST00000354363 GTF2IP78347 998 aa18.38■□□□□ 0.53
PRPF40A-201ENST00000354363 IFIT5Q13325 482 aaKnown RBP18.38■□□□□ 0.53
PRPF40A-201ENST00000354363 RASAL3Q86YV0 1011 aa18.38■□□□□ 0.53
PRPF40A-201ENST00000354363 MCOLN1Q9GZU1 580 aa18.38■□□□□ 0.53
PRPF40A-201ENST00000354363 SAGE1Q9NXZ1 904 aa18.38■□□□□ 0.53
PRPF40A-201ENST00000354363 CHMP3Q9Y3E7 222 aa18.38■□□□□ 0.53
PRPF40A-201ENST00000354363 TAF5LO75529 589 aa18.37■□□□□ 0.53
PRPF40A-201ENST00000354363 EPHA10Q5JZY3 1008 aa18.37■□□□□ 0.53
PRPF40A-201ENST00000354363 PRAMEF18Q5VWM3 479 aa18.37■□□□□ 0.53
PRPF40A-201ENST00000354363 MOB2Q70IA6 237 aa18.37■□□□□ 0.53
PRPF40A-201ENST00000354363 HELBQ8NG08 1087 aaPredicted RBP18.37■□□□□ 0.53
PRPF40A-201ENST00000354363 CSRNP1Q96S65 589 aa18.37■□□□□ 0.53
PRPF40A-201ENST00000354363 CD209Q9NNX6 404 aa18.37■□□□□ 0.53
PRPF40A-201ENST00000354363 RNF186Q9NXI6 227 aa18.37■□□□□ 0.53
PRPF40A-201ENST00000354363 CCDC85CA6NKD9 419 aa18.36■□□□□ 0.53
PRPF40A-201ENST00000354363 SASH1O94885 1247 aa18.36■□□□□ 0.53
PRPF40A-201ENST00000354363 LMBR1LQ6UX01 489 aa18.36■□□□□ 0.53
PRPF40A-201ENST00000354363 C15orf52Q6ZUT6 534 aaKnown RBP18.36■□□□□ 0.53
PRPF40A-201ENST00000354363 KIAA0825Q8IV33 1275 aa18.36■□□□□ 0.53
PRPF40A-201ENST00000354363 GRM8O00222 908 aa18.35■□□□□ 0.53
PRPF40A-201ENST00000354363 ZBED3Q96IU2 234 aaPredicted RBP18.35■□□□□ 0.53
PRPF40A-201ENST00000354363 HDAC9Q9UKV0 1011 aa18.35■□□□□ 0.53
PRPF40A-201ENST00000354363 TRPA1O75762 1119 aa18.34■□□□□ 0.53
PRPF40A-201ENST00000354363 DGKZQ13574 1117 aa18.34■□□□□ 0.53
PRPF40A-201ENST00000354363 UBE2Q2LH0YL09 131 aa18.34■□□□□ 0.53
PRPF40A-201ENST00000354363 ALDH1L1O75891 902 aa18.34■□□□□ 0.53
PRPF40A-201ENST00000354363 ZNF594Q96JF6 807 aaPredicted RBP18.34■□□□□ 0.53
PRPF40A-201ENST00000354363 CCDC57Q2TAC2 916 aa18.33■□□□□ 0.52
PRPF40A-201ENST00000354363 REM2Q8IYK8 340 aaPredicted RBP18.33■□□□□ 0.52
PRPF40A-201ENST00000354363 CERS5Q8N5B7 392 aa18.33■□□□□ 0.52
PRPF40A-201ENST00000354363 C9orf78Q9NZ63 289 aaPredicted RBP18.33■□□□□ 0.52
PRPF40A-201ENST00000354363 ZNF521Q96K83 1311 aa18.32■□□□□ 0.52
PRPF40A-201ENST00000354363 IL1R1P14778 569 aa18.32■□□□□ 0.52
PRPF40A-201ENST00000354363 TTLL12Q14166 644 aaPredicted RBP18.32■□□□□ 0.52
PRPF40A-201ENST00000354363 SLC4A10Q6U841 1118 aa18.32■□□□□ 0.52
PRPF40A-201ENST00000354363 APOBEC3FQ8IUX4 373 aaKnown RBP18.32■□□□□ 0.52
PRPF40A-201ENST00000354363 NF2P35240 595 aa18.31■□□□□ 0.52
PRPF40A-201ENST00000354363 TAF7LQ5H9L4 462 aa18.31■□□□□ 0.52
PRPF40A-201ENST00000354363 LDHAL6AQ6ZMR3 332 aa18.31■□□□□ 0.52
PRPF40A-201ENST00000354363 ZNF804AQ7Z570 1209 aa18.31■□□□□ 0.52
PRPF40A-201ENST00000354363 SRCIN1Q9C0H9 1055 aa18.31■□□□□ 0.52
PRPF40A-201ENST00000354363 CNNM1Q9NRU3 951 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms