RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 RPUSD1Q9UJJ7 312 aaKnown RBP7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 TMEM5Q9Y2B1 443 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 FAM96BQ9Y3D0 163 aa7.09□□□□□ -1.27
SHKBP1-220ENST00000599716 TRAV38-1A0A0B4J264 116 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 RENP00797 406 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 LIPFP07098 398 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 CPT2P23786 658 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 SAA4P35542 130 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 TPTEP56180 551 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 BPIFB3P59826 476 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 C2orf68Q2NKX9 166 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 CDONQ4KMG0 1287 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 OXLD1Q5BKU9 147 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 DNM1P34Q6PK57 102 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 CYP4Z1Q86W10 505 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 RNF148Q8N7C7 305 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 OR9Q1Q8NGQ5 310 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 H1FXQ92522 213 aaKnown RBP7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 ERGIC1Q969X5 290 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 C7orf34Q96L11 122 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 FUZQ9BT04 418 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 NDEL1Q9GZM8 345 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 WDR13Q9H1Z4 485 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 DPAGT1Q9H3H5 408 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 ELL3Q9HB65 397 aaPredicted RBP7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 VPREB3Q9UKI3 123 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 CAPN7Q9Y6W3 813 aa7.08□□□□□ -1.28
SHKBP1-220ENST00000599716 A0A1W2PRQ8 180 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 MEIOCA2RUB1 952 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 MEGF11A6BM72 1044 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 ANKRD61A6NGH8 418 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 HMGB1P1B2RPK0 211 aaPredicted RBP7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 BHLHE40O14503 412 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 NPFFO15130 113 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 TBX1O43435 398 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 PTBP3O95758 552 aaKnown RBP7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 NPPAP01160 153 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 LHBP01229 141 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 GYPBP06028 91 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 SPARCP09486 303 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 CLUP10909 449 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 NOS3P29474 1203 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 MSX2P35548 267 aaPredicted RBP7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 SPIBQ01892 262 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 DGCR6Q14129 220 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 HABP2Q14520 560 aaPredicted RBP7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 MAPRE2Q15555 327 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 KCNJ8Q15842 424 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 GFOD2Q3B7J2 385 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 DMRTC1Q5HYR2 192 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 ZBTB37Q5TC79 503 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 SAMD5Q5TGI4 173 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 WDR82Q6UXN9 313 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 GDPGP1Q6ZNW5 385 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 DCXRQ7Z4W1 244 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 ZBTB46Q86UZ6 589 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 ZNF511Q8NB15 262 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 TNFRSF14Q92956 283 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 COPS4Q9BT78 406 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 ANKRD19PQ9H560 264 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 C16orf95Q9H693 158 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 EGLN3Q9H6Z9 239 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 CENPMQ9NSP4 180 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 DNAJC27Q9NZQ0 273 aa7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 FAM32AQ9Y421 112 aaKnown RBP7.07□□□□□ -1.28
SHKBP1-220ENST00000599716 A0A1B0GVI7 797 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 H3BUX3 64 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 CDIPTO14735 213 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 GMDSO60547 372 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 TSPAN9O75954 239 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 SASH3O75995 380 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 FBP1P09467 338 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 COX4I1P13073 169 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 ZNF823P16415 610 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 RHCEP18577 417 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 SLC6A6P31641 620 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 GABRA5P31644 462 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 NUDT2P50583 147 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 ERVFRD-1P60508 538 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 RPL15P61313 204 aaKnown RBP7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 ECH1Q13011 328 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 NSUN5P1Q3KNT7 163 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 SLC36A3Q495N2 470 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 TEX36Q5VZQ5 186 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 C8orf82Q6P1X6 216 aaPredicted RBP7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 PGM2L1Q6PCE3 622 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 DPY19L4Q7Z388 723 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 KLHDC1Q8N7A1 406 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 LY6G5BQ8NDX9 201 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 PROKR2Q8NFJ6 384 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 OR8S1Q8NH09 359 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 MRAPQ8TCY5 172 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 RPL3LQ92901 407 aaKnown RBP7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 SPTSSAQ969W0 71 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 DHRS1Q96LJ7 313 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 WWC2-AS2Q96NR7 200 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 KCTD14Q9BQ13 255 aaPredicted RBP7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 SIKE1Q9BRV8 207 aa7.06□□□□□ -1.28
SHKBP1-220ENST00000599716 FGF23Q9GZV9 251 aaPredicted RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms