RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 EGLN3Q9H6Z9 239 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 UNKLQ9H9P5 680 aaKnown RBP5.89□□□□□ -1.47
VPS41-208ENST00000448833 CENPMQ9NSP4 180 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 UFSP2Q9NUQ7 469 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 ACOXLQ9NUZ1 547 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 MRPL22Q9NWU5 206 aaKnown RBP5.89□□□□□ -1.47
VPS41-208ENST00000448833 C1orf123Q9NWV4 160 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 KAAG1Q9UBP8 84 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 PRPF19Q9UMS4 504 aaKnown RBP5.89□□□□□ -1.47
VPS41-208ENST00000448833 LYVE1Q9Y5Y7 322 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 COMMD3-BMI1R4GMX3 469 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 IGHV3-64DA0A0J9YX35 117 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 A0A1B0GVI7 797 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 hCG_1807616A0A1W2PRN6 198 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 ANXA2P2A6NMY6 339 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 HOXA3O43365 443 aaPredicted RBP5.88□□□□□ -1.47
VPS41-208ENST00000448833 NDUFA7O95182 113 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 KNG1P01042 644 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 LHBP01229 141 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 GASTP01350 101 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 ANXA2P07355 339 aaKnown RBP5.88□□□□□ -1.47
VPS41-208ENST00000448833 SPI1P17947 270 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 PYCR1P32322 319 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 MSX2P35548 267 aaPredicted RBP5.88□□□□□ -1.47
VPS41-208ENST00000448833 CFHR2P36980 270 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 MAGEA2P43356 314 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 PRKXP51817 358 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 IL5RAQ01344 420 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 TRIM25Q14258 630 aaKnown RBP5.88□□□□□ -1.47
VPS41-208ENST00000448833 SNAI3Q3KNW1 292 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 TEX36Q5VZQ5 186 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 OR2T5Q6IEZ7 315 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 ZNF770Q6IQ21 691 aaPredicted RBP5.88□□□□□ -1.47
VPS41-208ENST00000448833 LYPD2Q6UXB3 125 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 CD300LDQ6UXZ3 194 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 SPATC1Q76KD6 591 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 DPY19L4Q7Z388 723 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 PIGWQ7Z7B1 504 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 BOLLQ8N9W6 283 aaKnown RBP5.88□□□□□ -1.47
VPS41-208ENST00000448833 AQP11Q8NBQ7 271 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 PAPD5Q8NDF8 572 aaKnown RBP5.88□□□□□ -1.47
VPS41-208ENST00000448833 OR6K6Q8NGW6 343 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 OR2T29Q8NH02 315 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 TEX47Q8TBZ9 253 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 DYRK2Q92630 601 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 MED30Q96HR3 178 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 LRGUKQ96M69 825 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 ZNF48Q96MX3 618 aaPredicted RBP5.88□□□□□ -1.47
VPS41-208ENST00000448833 DUX5Q96PT3 197 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 INTS14Q96SY0 518 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 MICU1Q9BPX6 476 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 NMNAT2Q9BZQ4 307 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 DNTTIP1Q9H147 329 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 OR10A2Q9H208 303 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 FN3KQ9H479 309 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 NIPAL2Q9H841 368 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 CNTD2Q9H8S5 307 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 ZNF556Q9HAH1 456 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 CMC2Q9NRP2 79 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 FAM96BQ9Y3D0 163 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 SAMHD1Q9Y3Z3 626 aaKnown RBP5.88□□□□□ -1.47
VPS41-208ENST00000448833 MPC1Q9Y5U8 109 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 KPTNQ9Y664 436 aa5.88□□□□□ -1.47
VPS41-208ENST00000448833 IGHV1-69DA0A0B4J2H0 117 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 CENPVL3A0A0U1RRI6 287 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 DHRS12A0PJE2 317 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 BTBD17A6NE02 478 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 ARRDC5A6NEK1 342 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 FAM181BA6NEQ2 426 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 TVP23AA6NH52 213 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 ACOD1A6NK06 481 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 TMEM210A6NLX4 147 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 B2RBV5 119 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 GNGT2O14610 69 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 TIMM23O14925 209 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 TBX1O43435 398 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 NDUFB3O43676 98 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 GLCEO94923 617 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 IGHV1-69P01742 117 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 HMGN1P05114 100 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 H2BFMP0C1H6 154 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 RAP2AP10114 183 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 EEF1B2P24534 225 aaKnown RBP5.87□□□□□ -1.47
VPS41-208ENST00000448833 GSTT1P30711 240 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 CX3CR1P49238 355 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 FAM3AP98173 230 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 CRMP1Q14194 572 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 EIF2B1Q14232 305 aaKnown RBP5.87□□□□□ -1.47
VPS41-208ENST00000448833 DEFB112Q30KQ8 113 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 CDONQ4KMG0 1287 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 LRRC10Q5BKY1 277 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 FAM201AQ5SY85 155 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 GLYATL3Q5SZD4 288 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 PRAMEF6Q5VXH4 476 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 SFRP4Q6FHJ7 346 aaPredicted RBP5.87□□□□□ -1.47
VPS41-208ENST00000448833 METAP1DQ6UB28 335 aaPredicted RBP5.87□□□□□ -1.47
VPS41-208ENST00000448833 CYP2R1Q6VVX0 501 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 BRD3OSQ6XYD6 125 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 GDPGP1Q6ZNW5 385 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 C1orf122Q6ZSJ8 110 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms