RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 RAB43Q86YS6 212 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 NKAIN4Q8IVV8 208 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 PRR22Q8IZ63 422 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 TCEANCQ8N8B7 351 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 GATSQ8NAP1 163 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 NPEPL1Q8NDH3 523 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 OR2Y1Q8NGV0 311 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 RHOXF1Q8NHV9 184 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 RAB2BQ8WUD1 216 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 ADIPOR1Q96A54 375 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 TMEM80Q96HE8 168 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 TMEM43Q9BTV4 400 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 MND1Q9BWT6 205 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 SHARPINQ9H0F6 387 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 FN3KQ9H479 309 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 METTL7AQ9H8H3 244 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 KLRF1Q9NZS2 232 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 CNIH4Q9P003 139 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 ERVK-18Q9QC07 812 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 PISDQ9UG56 409 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 PSORS1C1Q9UIG5 152 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 KLHL21Q9UJP4 597 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 ERGIC3Q9Y282 383 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 SLC6A5Q9Y345 797 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 EXOSC1Q9Y3B2 195 aaKnown RBP4.07□□□□□ -1.76
VPS29-212ENST00000621131 ZNF337Q9Y3M9 751 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 URB1O60287 2271 aaKnown RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 AHCTF1Q8WYP5 2266 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 ASCC3Q8N3C0 2202 aaKnown RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 IGHV3OR16-10A0A075B7F0 116 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 A0A087WUJ7 227 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 LOC102723996A0A087X1L8 192 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 NSG1A0A0A6YYJ2 146 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 CLDN24A6NM45 220 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 ENO4A6NNW6 628 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 C21orf140B9A014 251 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 SLC22A1O15245 554 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 TLX2O43763 284 aaPredicted RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 TSPAN2O60636 221 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 ENTPD6O75354 484 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 CSO75390 466 aaKnown RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 WBP4O75554 376 aaKnown RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 OR7A10O76100 309 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 STK17BO94768 372 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 OR6A2O95222 327 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 IGF2P01344 180 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 MT-ND2P03891 347 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 CD59P13987 128 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 CCNA2P20248 432 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 DCKP27707 260 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 HTR2AP28223 471 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 POLR2IP36954 125 aaKnown RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 SLC1A3P43003 542 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 CAPZA2P47755 286 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 POLR2HP52434 150 aaKnown RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 C17orf67Q0P5P2 114 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 ST3GAL4Q11206 333 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 RAB40BQ12829 278 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 SKP2Q13309 424 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 PMS2P3Q13401 168 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 DYNC1I2Q13409 638 aaKnown RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 ISXQ2M1V0 245 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 PDLIM3Q53GG5 364 aaPredicted RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 SLC25A53Q5H9E4 307 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 CLEC12AQ5QGZ9 265 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 SLC25A30Q5SVS4 291 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 GPR107Q5VW38 600 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 NXNL2Q5VZ03 156 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 TMEM236Q5W0B7 351 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 SLC25A47Q6Q0C1 308 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 Q6ZPB1 254 aaPredicted RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 BTN2A1Q7KYR7 527 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 NDUFAF7Q7L592 441 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 NANOGNBQ7Z5D8 188 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 COMTD1Q86VU5 262 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 ERI1Q8IV48 349 aaKnown RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 ZNF321PQ8N8H1 164 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 FAM71CQ8NEG0 241 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 OR13F1Q8NGS4 319 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 OR52N5Q8NH56 324 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 OR5W2Q8NH69 310 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 PFN4Q8NHR9 129 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 ZNF519Q8TB69 540 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 M1APQ8TC57 530 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 ST8SIA1Q92185 356 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 GGHQ92820 318 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 KIAA1143Q96AT1 154 aaPredicted RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 ISOC1Q96CN7 298 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 DDIT4LQ96D03 193 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 SAT2Q96F10 170 aaPredicted RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 SH3YL1Q96HL8 342 aaPredicted RBP4.06□□□□□ -1.76
VPS29-212ENST00000621131 IP6K3Q96PC2 410 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 IL4I1Q96RQ9 567 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 OR2B2Q9GZK3 357 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 OR52D1Q9H346 318 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 DUSP21Q9H596 190 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 EGLN3Q9H6Z9 239 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 PTGES2Q9H7Z7 377 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 APMAPQ9HDC9 416 aa4.06□□□□□ -1.76
VPS29-212ENST00000621131 ACOT13Q9NPJ3 140 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms