RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ZNF593O00488 134 aaPredicted RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 ARPC2O15144 300 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 TMPRSS2O15393 492 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 FAM20BO75063 409 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 TOX4O94842 621 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 CCNB2O95067 398 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 PTBP3O95758 552 aaKnown RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 GPANK1O95872 356 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 MUC1P15941 1255 aaPredicted RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 PAICSP22234 425 aaKnown RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 CA6P23280 308 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 HSD11B1P28845 292 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 OTX1P32242 354 aaPredicted RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 NAA10P41227 235 aaPredicted RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 ENTPD1P49961 510 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 ERFP50548 548 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 SLC25A1P53007 311 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 MAB21L1Q13394 359 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 SLC9A3R2Q15599 337 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 OR8B8Q15620 311 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 PCK2Q16822 640 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 MICBQ29980 383 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 FAM98BQ52LJ0 330 aaKnown RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 SLC35F1Q5T1Q4 408 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 PGBD2Q6P3X8 592 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 DCXRQ7Z4W1 244 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 BCL6BQ8N143 479 aaPredicted RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 LNX2Q8N448 690 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 FITM2Q8N6M3 262 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 CSNK2A3Q8NEV1 391 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 OR2T33Q8NG76 320 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 OR10S1Q8NGN2 331 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 OR8S1Q8NH09 359 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 OR4F5Q8NH21 305 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 TBC1D15Q8TC07 691 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 NPRL2Q8WTW4 380 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 GATAD2BQ8WXI9 593 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 DACT3Q96B18 629 aaPredicted RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 TMIGD2Q96BF3 282 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 MAP6Q96JE9 813 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 TECTBQ96PL2 329 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 COPS4Q9BT78 406 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 ADAT1Q9BUB4 502 aaKnown RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 TEX12Q9BXU0 123 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 FAM107BQ9H098 131 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 MMADHCQ9H3L0 296 aaPredicted RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 RGCCQ9H4X1 137 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 REEP1Q9H902 201 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 RNPEPL1Q9HAU8 725 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 BEX1Q9HBH7 125 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 PNRC2Q9NPJ4 139 aaKnown RBP5.9□□□□□ -1.46
VPS41-208ENST00000448833 TBC1D23Q9NUY8 699 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 ZNF391Q9UJN7 358 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 MMP24Q9Y5R2 645 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 V9GYQ6 96 aa5.9□□□□□ -1.46
VPS41-208ENST00000448833 TRAV40A0A0B4J280 105 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 A6NLC8 198 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 ZNF879B4DU55 563 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 TNFRSF13BO14836 293 aaPredicted RBP5.89□□□□□ -1.47
VPS41-208ENST00000448833 ADAM20O43506 726 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 ZNF205O95201 554 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 GRPP07492 148 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 SPARCP09486 303 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 IGHV4-38-2P0DP08 117 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 ZNF3P17036 446 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 GNALP38405 381 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 PMELP40967 661 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 FGF12P61328 243 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 ZNF92Q03936 586 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 MPPED2Q15777 294 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 OCLNQ16625 522 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 TIGD6Q17RP2 521 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 MICAQ29983 383 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 CLEC12AQ5QGZ9 265 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 OTPQ5XKR4 325 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 Q6YL49 198 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 ZNF841Q6ZN19 808 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 C17orf107Q6ZR85 190 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 SHFQ7M4L6 423 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 SLC36A1Q7Z2H8 476 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 NAA40Q86UY6 237 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 DHFR2Q86XF0 187 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 DEFB107AQ8IZN7 70 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 CMTM4Q8IZR5 234 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 LINC00528Q8N1L1 170 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 DTX3Q8N9I9 347 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 CYB561A3Q8NBI2 242 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 SLC37A3Q8NCC5 494 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 SSMEM1Q8WWF3 244 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 LRTOMTQ8WZ04 291 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 SPSB4Q96A44 273 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 C12orf43Q96C57 262 aaKnown RBP5.89□□□□□ -1.47
VPS41-208ENST00000448833 SLAMF6Q96DU3 332 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 WDFY2Q96P53 400 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 DDOQ99489 341 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 PCGF1Q9BSM1 259 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 TSSK6Q9BXA6 273 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 DGCR6LQ9BY27 220 aa5.89□□□□□ -1.47
VPS41-208ENST00000448833 DPAGT1Q9H3H5 408 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms