RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 KRTAP27-1Q3LI81 207 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 TREML4Q6UXN2 200 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 MRPL21Q7Z2W9 205 aaKnown RBP12.31□□□□□ -0.44
SKA1-202ENST00000398452 OR51E1Q8TCB6 317 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 RPS4Y2Q8TD47 263 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 ISOC1Q96CN7 298 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 REEP6Q96HR9 211 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 RADILQ96JH8 1075 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 FAM71F1Q96KD3 344 aaPredicted RBP12.31□□□□□ -0.44
SKA1-202ENST00000398452 C1QTNF5Q9BXJ0 243 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 BCL2L14Q9BZR8 327 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 ESRP2Q9H6T0 727 aaKnown RBP12.31□□□□□ -0.44
SKA1-202ENST00000398452 GPR84Q9NQS5 396 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 CEPT1Q9Y6K0 416 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 CREBBPQ92793 2442 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 IGHV1-18A0A0C4DH31 117 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 VSTM5A8MXK1 200 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 H3BSH0 61 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 CLDN1O95832 211 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 IGLV1-44P01699 117 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 CELA3BP08861 270 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 TUBG1P23258 451 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 CCKARP32238 428 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 GNALP38405 381 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 RPS23P62266 143 aaKnown RBP12.3□□□□□ -0.44
SKA1-202ENST00000398452 FABP5Q01469 135 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 HSD17B12Q53GQ0 312 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 ZMAT1Q5H9K5 638 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 C22orf42Q6IC83 251 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 USP43Q70EL4 1123 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 NAA40Q86UY6 237 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 RDH10Q8IZV5 341 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 FTMTQ8N4E7 242 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 ITLN2Q8WWU7 325 aaPredicted RBP12.3□□□□□ -0.44
SKA1-202ENST00000398452 ITFG2Q969R8 447 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 PPP1R14AQ96A00 147 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 OR14A2Q96R54 314 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 OR51B6Q9H340 312 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 NEK6Q9HC98 313 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 TCF7L1Q9HCS4 588 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 TUBG2Q9NRH3 451 aa12.3□□□□□ -0.44
SKA1-202ENST00000398452 TXNL4BQ9NX01 149 aaKnown RBP12.3□□□□□ -0.44
SKA1-202ENST00000398452 SF3B6Q9Y3B4 125 aaKnown RBP12.3□□□□□ -0.44
SKA1-202ENST00000398452 NCOA6Q14686 2063 aaPredicted RBP12.3□□□□□ -0.44
SKA1-202ENST00000398452 GGT3PA6NGU5 568 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 PDCD5O14737 125 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 GPX5O75715 221 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 DHRS3O75911 302 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 RAF1P04049 648 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 FAM157BP0CG42 384 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 PCSK6P29122 969 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 GCH1P30793 250 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 FGF9P31371 208 aaPredicted RBP12.29□□□□□ -0.44
SKA1-202ENST00000398452 CRYBB2P43320 205 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 MAP2K3P46734 347 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 SERPINB10P48595 397 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 VBP1P61758 197 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 PPP3R1P63098 170 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 NAAAQ02083 359 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 DOC2BQ14184 412 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 RSPO1Q2MKA7 263 aaPredicted RBP12.29□□□□□ -0.44
SKA1-202ENST00000398452 SNAI3Q3KNW1 292 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 CD200R1LQ6Q8B3 271 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 PGAP1Q75T13 922 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 OR1J1Q8NGS3 322 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 OR13C5Q8NGS8 318 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 RPL3LQ92901 407 aaKnown RBP12.29□□□□□ -0.44
SKA1-202ENST00000398452 TMEM106AQ96A25 262 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 C12orf43Q96C57 262 aaKnown RBP12.29□□□□□ -0.44
SKA1-202ENST00000398452 ZNF75AQ96N20 296 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 WFIKKN1Q96NZ8 548 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 REPIN1Q9BWE0 567 aaKnown RBP12.29□□□□□ -0.44
SKA1-202ENST00000398452 NAA50Q9GZZ1 169 aaKnown RBP12.29□□□□□ -0.44
SKA1-202ENST00000398452 PTTG3PQ9NZH4 202 aa12.29□□□□□ -0.44
SKA1-202ENST00000398452 DOPEY1Q5JWR5 2465 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 IGHV2OR16-5A0A0B4J2B6 119 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 SELEP16581 610 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 CALRP27797 417 aaKnown RBP12.28□□□□□ -0.44
SKA1-202ENST00000398452 UCP2P55851 309 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 SELENOVP59797 346 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 PPP1CBP62140 327 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 RIPPLY1Q0D2K3 151 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 GLYATL3Q5SZD4 288 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 PRSS45Q7RTY3 260 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 SEMA6DQ8NFY4 1073 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 OR2AE1Q8NHA4 323 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 SGK3Q96BR1 496 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 C10orf35Q96D05 121 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 POU2F3Q9UKI9 436 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 CENPEQ02224 2701 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 TEX15Q9BXT5 2789 aa12.28□□□□□ -0.44
SKA1-202ENST00000398452 TRBV5-5A0A0J9YX44 114 aa12.27□□□□□ -0.45
SKA1-202ENST00000398452 A0A1W2PPK0 400 aa12.27□□□□□ -0.45
SKA1-202ENST00000398452 LOC390937A0A1W2PQ73 354 aa12.27□□□□□ -0.45
SKA1-202ENST00000398452 H3BMQ9 156 aa12.27□□□□□ -0.45
SKA1-202ENST00000398452 MAGEB3O15480 346 aa12.27□□□□□ -0.45
SKA1-202ENST00000398452 SMPD2O60906 423 aa12.27□□□□□ -0.45
SKA1-202ENST00000398452 CCL1P22362 96 aa12.27□□□□□ -0.45
SKA1-202ENST00000398452 CD40P25942 277 aa12.27□□□□□ -0.45
SKA1-202ENST00000398452 SOX6P35712 828 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms