RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PLSCR3Q9NRY6 295 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 ECI1P42126 302 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 RPL7L1Q6DKI1 246 aaKnown RBP14.05□□□□□ -0.16
PTPRF-201ENST00000359947 FAAP20Q6NZ36 180 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 DND1Q8IYX4 353 aaKnown RBP14.05□□□□□ -0.16
PTPRF-201ENST00000359947 MITD1Q8WV92 249 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 GALMQ96C23 342 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 CMC2Q9NRP2 79 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 KCNE3Q9Y6H6 103 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 TEX51A0A1B0GUA7 166 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 TRABD2BA6NFA1 517 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 CDX4O14627 284 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-201ENST00000359947 SNAPINO95295 136 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 CHRM2P08172 466 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 B4GALNT1Q00973 533 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 ACY3Q96HD9 319 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 IKZF5Q9H5V7 419 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 MOB1AQ9H8S9 216 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 PPP3CBP16298 524 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 CA6P23280 308 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 URGCP-MRPS24S4R325 110 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 ANGPTL7O43827 346 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 TMIGD3P0DMS9 266 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-201ENST00000359947 YBX1P67809 324 aaKnown RBP14.04□□□□□ -0.16
PTPRF-201ENST00000359947 MICBQ29980 383 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 FAM219BQ5XKK7 198 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 FCRL1Q96LA6 429 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 ZNF835Q9Y2P0 537 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 NHSQ6T4R5 1651 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 ZNF785A8K8V0 405 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 FZD5Q13467 585 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 OR5I1Q13606 314 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 TMEM215Q68D42 235 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 LINC00615Q96LM1 132 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-201ENST00000359947 R4GMQ9 66 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 MCM3APO60318 1980 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 ASCL1P50553 236 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 OR4D9Q8NGE8 314 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 NUDCD2Q8WVJ2 157 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 PRRX2Q99811 253 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 CTXN2P0C2S0 81 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 POU3F3P20264 500 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-201ENST00000359947 OR8U1Q8NH10 309 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 SLC25A37Q9NYZ2 338 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 SOX15O60248 233 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 RBP4P02753 201 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 LIPAP38571 399 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 Q56UQ5 140 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 TTC9Q92623 222 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 SLCO5A1Q9H2Y9 848 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 LAMB1P07942 1786 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 TRDV1A0A1B0GX56 115 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 SNRPGP62308 76 aaKnown RBP14.04□□□□□ -0.16
PTPRF-201ENST00000359947 ZNF85Q03923 595 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 SIGLEC11Q96RL6 698 aa14.04□□□□□ -0.16
PTPRF-201ENST00000359947 TRPM6Q9BX84 2022 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 A0A087WUJ7 227 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 CCL4P13236 92 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 ADGRG3Q86Y34 549 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 NT5CQ8TCD5 201 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 KCNIP2Q9NS61 270 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 A4GNTQ9UNA3 340 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 FAM157AC9JC47 383 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 OR2F2O95006 317 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 TMEM211Q6ICI0 200 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 RHOXF1Q8NHV9 184 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 APOBEC4Q8WW27 367 aaKnown RBP14.03□□□□□ -0.16
PTPRF-201ENST00000359947 ISG20L2Q9H9L3 353 aaKnown RBP14.03□□□□□ -0.16
PTPRF-201ENST00000359947 TAAR3PQ9P1P4 343 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 A0A0A6YYD5 115 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 ONECUT2O95948 504 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 DBPQ10586 325 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-201ENST00000359947 TMEM268Q5VZI3 342 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 NANOGP1Q8N7R0 232 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 OR52I2Q8NH67 350 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 MED9Q9NWA0 146 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 ICE1Q9Y2F5 2266 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 HLA-HP01893 362 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 ZNF628Q5EBL2 1059 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 TMEM108Q6UXF1 575 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 WDR88Q6ZMY6 472 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 WDR31Q8NA23 367 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 FABP7O15540 132 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 ZNF205O95201 554 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 SLC36A1Q7Z2H8 476 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 TMEM102Q8N9M5 508 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-201ENST00000359947 ZFP62Q8NB50 900 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-201ENST00000359947 MAGT1Q9H0U3 335 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 TAF9BQ9HBM6 251 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 LPAR2Q9HBW0 351 aa14.03□□□□□ -0.16
PTPRF-201ENST00000359947 ZXDAP98168 799 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 OR10D3Q8NH80 312 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 SLC26A1Q9H2B4 701 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 POLR2AP24928 1970 aaKnown RBP14.02□□□□□ -0.16
PTPRF-201ENST00000359947 HMX2A2RU54 273 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 CTSVO60911 334 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 OR2J3O76001 311 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 CNR1P21554 472 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 RPS19P39019 145 aaKnown RBP14.02□□□□□ -0.16
PTPRF-201ENST00000359947 OSR2Q8N2R0 312 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms