RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 IL10RAQ13651 578 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 CTU2Q2VPK5 515 aaKnown RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 MCHR2Q969V1 340 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 AKR1E2Q96JD6 320 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 PLEKHA2Q9HB19 425 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 BARX1Q9HBU1 254 aaPredicted RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 ANKRD10Q9NXR5 420 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 YTHDF2Q9Y5A9 579 aaKnown RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 TMEM218A2RU14 115 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 YIF1AO95070 293 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 SFTA3P0C7M3 94 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 RPL12P30050 165 aaKnown RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 ELAVL1Q15717 326 aaKnown RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 ZNF787Q6DD87 383 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 TMEM174Q8WUU8 243 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 ZC3HAV1LQ96H79 300 aaKnown RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 PLA2G12AQ9BZM1 189 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 PPT2Q9UMR5 302 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 TIMM10BQ9Y5J6 103 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 NID1P14543 1247 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 AGFG1P52594 562 aaKnown RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 BPIFB3P59826 476 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 CDK5Q00535 292 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 DLEU7Q6UYE1 221 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 CMC2Q9NRP2 79 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 HS3ST3A1Q9Y663 406 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 ADAMTSL3P82987 1691 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 IGHV3-9P01782 118 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 OR5G3P0C626 314 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 TMIGD3P0DMS9 266 aaPredicted RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 OR1D5P58170 312 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 PMS2P11Q13670 270 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 CCSMST1Q4G0I0 132 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 NHLRC2Q8NBF2 726 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 LHFPL5Q8TAF8 219 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 EMC6Q9BV81 110 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 GABARAPL3Q9BY60 117 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 CTDSP1Q9GZU7 261 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 DLL4Q9NR61 685 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 SLC2A8Q9NY64 477 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 ING1Q9UK53 422 aaPredicted RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 CCL26Q9Y258 94 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 TRBV23-1A0A0A0MS06 115 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 SPP1P10451 314 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 HIST1H1CP16403 213 aaKnown RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 EGR3Q06889 387 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 XKR7Q5GH72 579 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 THEM4Q5T1C6 240 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 TSEN54Q7Z6J9 526 aaKnown RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 RPUSD4Q96CM3 377 aaKnown RBP9.05□□□□□ -0.96
COL4A6-208ENST00000538570 SIT1Q9Y3P8 196 aa9.05□□□□□ -0.96
COL4A6-208ENST00000538570 HMGN4O00479 90 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 CRYABP02511 175 aaKnown RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 CD1CP29017 333 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 ARR3P36575 388 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 ERHP84090 104 aaKnown RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 TOMM34Q15785 309 aaPredicted RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 CLEC12BQ2HXU8 276 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 HSF5Q4G112 596 aaPredicted RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 LHX4Q969G2 390 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 THOC3Q96J01 351 aaKnown RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 CDCA4Q9BXL8 241 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 NRSN2Q9GZP1 204 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 THAP10Q9P2Z0 257 aaPredicted RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 ZNF346Q9UL40 294 aaKnown RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 SLC17A4Q9Y2C5 497 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 CITO14578 2027 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 A0A087WV62 115 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 BMPR1BO00238 502 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 TBXA2RP21731 343 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 MPGP29372 298 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 ATOH1Q92858 354 aaPredicted RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 CHRDL1Q9BU40 450 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 ZNF552Q9H707 407 aaPredicted RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 RHOFQ9HBH0 211 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 C19orf53Q9UNZ5 99 aaPredicted RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 SIRPB1O00241 398 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 GALR2O43603 387 aaPredicted RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 ZNF354AO60765 605 aaPredicted RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 VAMP5O95183 116 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 PRRX1P54821 245 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 PCBP4P57723 403 aaKnown RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 UBE2MP61081 183 aaKnown RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 SNRPNP63162 240 aaKnown RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 PPP2CAP67775 309 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 ZNF528Q3MIS6 628 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 KHDC1LQ5JSQ8 128 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 C11orf42Q8N5U0 333 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 BCORP1Q8N888 145 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 SDF2Q99470 211 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 ZDHHC5Q9C0B5 715 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 OPN3Q9H1Y3 402 aaPredicted RBP9.04□□□□□ -0.96
COL4A6-208ENST00000538570 HCSTQ9UBK5 93 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 LAMP3Q9UQV4 416 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 M0R1X1 148 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 GPX5O75715 221 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 B3GALT4O96024 378 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 F11P03951 625 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 SLC25A6P12236 298 aa9.04□□□□□ -0.96
COL4A6-208ENST00000538570 DHODHQ02127 395 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms