RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 IGHV1-46P01743 117 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 HEXAP06865 529 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 H2BFMP0C1H6 154 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 ANPEPP15144 967 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 CFL1P23528 166 aaKnown RBP10.1□□□□□ -0.79
VPS52-213ENST00000461743 HTR1FP30939 366 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 NAA10P41227 235 aaPredicted RBP10.1□□□□□ -0.79
VPS52-213ENST00000461743 CX3CR1P49238 355 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 PSMA6P60900 246 aaKnown RBP10.1□□□□□ -0.79
VPS52-213ENST00000461743 CDK5R2Q13319 367 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 RIN1Q13671 783 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 GK2Q14410 553 aaPredicted RBP10.1□□□□□ -0.79
VPS52-213ENST00000461743 ALKBH6Q3KRA9 238 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 SLC25A30Q5SVS4 291 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 IZUMO2Q6UXV1 221 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 PGAP1Q75T13 922 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 MRPL21Q7Z2W9 205 aaKnown RBP10.1□□□□□ -0.79
VPS52-213ENST00000461743 PACRGLQ8N7B6 248 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 ZNF283Q8N7M2 679 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 CMBLQ96DG6 245 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 SLC22A4Q9H015 551 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 CENPMQ9NSP4 180 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 DECR2Q9NUI1 292 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 PTTG2Q9NZH5 202 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 ZNF391Q9UJN7 358 aa10.1□□□□□ -0.79
VPS52-213ENST00000461743 ACOD1A6NK06 481 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 SNTNA6NMZ2 147 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 MPZL2O60487 215 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 ZNF254O75437 659 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 RP2O75695 350 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 HPXP02790 462 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 TNFRSF1AP19438 455 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 ALOX5APP20292 161 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 USF1P22415 310 aaPredicted RBP10.09□□□□□ -0.79
VPS52-213ENST00000461743 DCTDP32321 178 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 CRYBB2P43320 205 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 MAGEB1P43366 347 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 TMEM33P57088 247 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 SNRPGP62308 76 aaKnown RBP10.09□□□□□ -0.79
VPS52-213ENST00000461743 CCL8P80075 99 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 ROM1Q03395 351 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 SLC3A1Q07837 685 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 MEDAGQ5VYS4 303 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 CIARTQ8N365 385 aaPredicted RBP10.09□□□□□ -0.79
VPS52-213ENST00000461743 OR8G5Q8NG78 346 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 OR13G1Q8NGZ3 307 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 SPSB4Q96A44 273 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 ZNF582Q96NG8 517 aaPredicted RBP10.09□□□□□ -0.79
VPS52-213ENST00000461743 IL4I1Q96RQ9 567 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 RGCCQ9H4X1 137 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 MOB1AQ9H8S9 216 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 CLN6Q9NWW5 311 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 IL19Q9UHD0 177 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS52-213ENST00000461743 NF1P21359 2839 aa10.09□□□□□ -0.79
VPS52-213ENST00000461743 IGHV1-69-2A0A0G2JMI3 117 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 IFNL4K9M1U5 179 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 M0R129 80 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 SMAD7O15105 426 aaKnown RBP10.08□□□□□ -0.8
VPS52-213ENST00000461743 TPD52L2O43399 206 aaKnown RBP10.08□□□□□ -0.8
VPS52-213ENST00000461743 BAG2O95816 211 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 TACSTD2P09758 323 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 SBK2P0C263 348 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 POLR2IP36954 125 aaKnown RBP10.08□□□□□ -0.8
VPS52-213ENST00000461743 DDOSTP39656 456 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 PRKXP51817 358 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 CHN2P52757 468 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 HLXQ14774 488 aaPredicted RBP10.08□□□□□ -0.8
VPS52-213ENST00000461743 CARTPTQ16568 116 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 ZNF829Q3KNS6 432 aaPredicted RBP10.08□□□□□ -0.8
VPS52-213ENST00000461743 SNAI3Q3KNW1 292 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 CLEC9AQ6UXN8 241 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.08□□□□□ -0.8
VPS52-213ENST00000461743 SLC35F2Q8IXU6 374 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 ZNF679Q8IYX0 411 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 THEM6Q8WUY1 208 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 GTF3AQ92664 365 aaKnown RBP10.08□□□□□ -0.8
VPS52-213ENST00000461743 HPS1Q92902 700 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 MBOAT4Q96T53 435 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 AMELYQ99218 206 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 SLC30A2Q9BRI3 323 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 REPIN1Q9BWE0 567 aaKnown RBP10.08□□□□□ -0.8
VPS52-213ENST00000461743 MROQ9BYG7 248 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 BPESC1Q9GZL8 116 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 OR10A2Q9H208 303 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 ADGRL4Q9HBW9 690 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 MSL2Q9HCI7 577 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 SMPD3Q9NY59 655 aaPredicted RBP10.08□□□□□ -0.8
VPS52-213ENST00000461743 MRPL15Q9P015 296 aaKnown RBP10.08□□□□□ -0.8
VPS52-213ENST00000461743 LRP12Q9Y561 859 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 GMPPBQ9Y5P6 360 aa10.08□□□□□ -0.8
VPS52-213ENST00000461743 CLDN25C9JDP6 229 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 ZNF670-ZNF695F2Z2N8 137 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 SLC16A6O15403 523 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 SPRY3O43610 288 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 ANXA2P07355 339 aaKnown RBP10.07□□□□□ -0.8
VPS52-213ENST00000461743 MRPL3P09001 348 aaKnown RBP10.07□□□□□ -0.8
VPS52-213ENST00000461743 GPR6P46095 362 aaPredicted RBP10.07□□□□□ -0.8
VPS52-213ENST00000461743 SRP9P49458 86 aaKnown RBP10.07□□□□□ -0.8
VPS52-213ENST00000461743 ZNF121P58317 390 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms