RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 NBASA2RRP1 2371 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 TEX51A0A1B0GUA7 166 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 PRSS37A4D1T9 235 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 OR14I1A6ND48 311 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 RHPN2P1A8MT19 583 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 RER1O15258 196 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 SYT7O43581 403 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 SULT1B1O43704 296 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 PRAF2O60831 178 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 ZNF254O75437 659 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 STK17BO94768 372 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 MAPK3P27361 379 aaPredicted RBP7.74□□□□□ -1.17
USP40-203ENST00000427112 TSFMP43897 325 aaKnown RBP7.74□□□□□ -1.17
USP40-203ENST00000427112 KCNJ3P48549 501 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 NOVA1P51513 510 aaKnown RBP7.74□□□□□ -1.17
USP40-203ENST00000427112 FXYD4P59646 89 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 TSPO2Q5TGU0 170 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 UNQ9370/PRO34162Q6UXP9 181 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 OR10H5Q8NGA6 315 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 PIGTQ969N2 578 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 ISOC2Q96AB3 205 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 REEP6Q96HR9 211 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 ZNF426Q9BUY5 554 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 KLRF1Q9NZS2 232 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 A0A0A6YYH2 397 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 A6NJ64 397 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 H3BMH7 237 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 ATXN7O15265 892 aaPredicted RBP7.73□□□□□ -1.17
USP40-203ENST00000427112 GSTZ1O43708 216 aaPredicted RBP7.73□□□□□ -1.17
USP40-203ENST00000427112 SRPX2O60687 465 aaPredicted RBP7.73□□□□□ -1.17
USP40-203ENST00000427112 ZNF432O94892 652 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 AHSA1O95433 338 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 IGHV4-34P06331 123 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 FABP1P07148 127 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 CSF1P09603 554 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 GIMD1P0DJR0 217 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 SERPINA2P20848 420 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 HAAOP46952 286 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 TLE3Q04726 772 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 RNF151Q2KHN1 245 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 ZNF764Q96H86 408 aaPredicted RBP7.73□□□□□ -1.17
USP40-203ENST00000427112 NMNAT2Q9BZQ4 307 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 CRISPLD2Q9H0B8 497 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 OR52A1Q9UKL2 312 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 FREM1Q5H8C1 2179 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 THADAQ6YHU6 1953 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 ZNF208O43345 1280 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 FOLR1P15328 257 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 PNLIPP16233 465 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 ZP3P21754 424 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 GLRA1P23415 457 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 GABRR1P24046 479 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 OPRM1P35372 400 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 OR3A4PP47883 348 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 RAB2AP61019 212 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 ZNF585AQ6P3V2 769 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 FAM57BQ71RH2 274 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 SLC29A4Q7RTT9 530 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 C9orf40Q8IXQ3 194 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 GTPBP8Q8N3Z3 284 aaPredicted RBP7.73□□□□□ -1.17
USP40-203ENST00000427112 CLEC1AQ8NC01 280 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 ZNF248Q8NDW4 579 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 OR13C8Q8NGS7 320 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 CUTCQ9NTM9 273 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 RCL1Q9Y2P8 373 aaKnown RBP7.73□□□□□ -1.17
USP40-203ENST00000427112 LSM5Q9Y4Y9 91 aaKnown RBP7.73□□□□□ -1.17
USP40-203ENST00000427112 CLDN16Q9Y5I7 305 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 PTPRSQ13332 1948 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 MEX3AA1L020 520 aaKnown RBP7.73□□□□□ -1.17
USP40-203ENST00000427112 WIPF3A6NGB9 483 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 TMEM212A6NML5 194 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 EFCAB7A8K855 629 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 ANGPTL7O43827 346 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 DHPSP49366 369 aaPredicted RBP7.73□□□□□ -1.17
USP40-203ENST00000427112 EMP2P54851 167 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 SLC37A1P57057 533 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 RAB5BP61020 215 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 C1orf140Q5VVS0 124 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 FAM71CQ8NEG0 241 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 OR8B4Q96RC9 309 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 PELOQ9BRX2 385 aaKnown RBP7.73□□□□□ -1.17
USP40-203ENST00000427112 POTEKPQ9BYX7 375 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 PDE7BQ9NP56 450 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 B3GALT1Q9Y5Z6 326 aa7.73□□□□□ -1.17
USP40-203ENST00000427112 ZNF878C9JN71 531 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 HSPB6O14558 160 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ARPC3O15145 178 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 C1QL1O75973 258 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 AK1P00568 194 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 IGHV3-9P01782 118 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ABCD3P28288 659 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 RBM34P42696 430 aaKnown RBP7.72□□□□□ -1.17
USP40-203ENST00000427112 RGS19P49795 217 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 S100A12P80511 92 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 DMWDQ09019 674 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 C9orf135Q5VTT2 229 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ZNF679Q8IYX0 411 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 PUSL1Q8N0Z8 303 aaKnown RBP7.72□□□□□ -1.17
USP40-203ENST00000427112 OR5M9Q8NGP3 310 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 WBP1Q96G27 269 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms