RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 THRSPQ92748 146 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 RNASE6Q93091 150 aaKnown RBP12.38□□□□□ -0.43
SKA1-202ENST00000398452 TMIGD2Q96BF3 282 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 TMED9Q9BVK6 235 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 OR10A2Q9H208 303 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 PNRC2Q9NPJ4 139 aaKnown RBP12.38□□□□□ -0.43
SKA1-202ENST00000398452 PLEKHB1Q9UF11 243 aaPredicted RBP12.38□□□□□ -0.43
SKA1-202ENST00000398452 OR52A1Q9UKL2 312 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 SSR3Q9UNL2 185 aa12.38□□□□□ -0.43
SKA1-202ENST00000398452 DIDO1Q9BTC0 2240 aaKnown RBP12.37□□□□□ -0.43
SKA1-202ENST00000398452 C5orf49A4QMS7 147 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 PRR32B1ATL7 298 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 E9PI62 339 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 OGG1O15527 345 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 LALBAP00709 142 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 LCATP04180 440 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 SERPINA5P05154 406 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 CD1AP06126 327 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 UBCP0CG48 685 aaKnown RBP12.37□□□□□ -0.43
SKA1-202ENST00000398452 APEX1P27695 318 aaKnown RBP12.37□□□□□ -0.43
SKA1-202ENST00000398452 GABRA5P31644 462 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 UGT2B10P36537 528 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 LIPAP38571 399 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 SMCPP49901 116 aaPredicted RBP12.37□□□□□ -0.43
SKA1-202ENST00000398452 ZNF121P58317 390 aaPredicted RBP12.37□□□□□ -0.43
SKA1-202ENST00000398452 ADORA2A-AS1P86434 159 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 TMEM244Q5VVB8 128 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 FDX2Q6P4F2 183 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 PAMR1Q6UXH9 720 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 FAM57BQ71RH2 274 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 SLC30A7Q8NEW0 376 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 C4orf45Q96LM5 186 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 FAM192AQ9GZU8 254 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 PBOV1Q9GZY1 135 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 NDUFB11Q9NX14 153 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 B3GNT2Q9NY97 397 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 NDRG3Q9UGV2 375 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 ST6GALNAC2Q9UJ37 374 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 STUB1Q9UNE7 303 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 GSTK1Q9Y2Q3 226 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 ZNF281Q9Y2X9 895 aa12.37□□□□□ -0.43
SKA1-202ENST00000398452 INTS1Q8N201 2190 aaKnown RBP12.37□□□□□ -0.43
SKA1-202ENST00000398452 FREM1Q5H8C1 2179 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 LOC100506127A0A0U1RQW1 187 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 A0A1B0GVI7 797 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 DPPA5A6NC42 116 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 AIREO43918 545 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 ZNF12P17014 697 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 AGAP20933 346 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 COL8A1P27658 744 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 MALLQ13021 153 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 ODF4Q2M2E3 257 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 YIF1BQ5BJH7 314 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 WDR38Q5JTN6 314 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 DMKNQ6E0U4 476 aaPredicted RBP12.36□□□□□ -0.43
SKA1-202ENST00000398452 GDPGP1Q6ZNW5 385 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 CATSPERDQ86XM0 798 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 ZNF808Q8N4W9 903 aaPredicted RBP12.36□□□□□ -0.43
SKA1-202ENST00000398452 IL17RDQ8NFM7 739 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 RAB2BQ8WUD1 216 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 TSEN15Q8WW01 171 aaKnown RBP12.36□□□□□ -0.43
SKA1-202ENST00000398452 GHSRQ92847 366 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 TMEM203Q969S6 136 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 MED18Q9BUE0 208 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 FUNDC2Q9BWH2 189 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 C1QTNF6Q9BXI9 259 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 ZNF224Q9NZL3 707 aa12.36□□□□□ -0.43
SKA1-202ENST00000398452 NUFIP1Q9UHK0 495 aaKnown RBP12.36□□□□□ -0.43
SKA1-202ENST00000398452 RGS9O75916 674 aaPredicted RBP12.35□□□□□ -0.43
SKA1-202ENST00000398452 CLDN14O95500 239 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 CD2P06729 351 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 SLC2A1P11166 492 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 CRYGSP22914 178 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 MAPK3P27361 379 aaPredicted RBP12.35□□□□□ -0.43
SKA1-202ENST00000398452 TMBIM6P55061 237 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 MFGE8Q08431 387 aaPredicted RBP12.35□□□□□ -0.43
SKA1-202ENST00000398452 GFOD2Q3B7J2 385 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 FBXL19-AS1Q494R0 122 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 ANKRD13BQ86YJ7 626 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 ELMOD2Q8IZ81 293 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 FAM169BQ8N8A8 192 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 WDR31Q8NA23 367 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 OR5L1Q8NGL2 311 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 ZNF420Q8TAQ5 688 aaPredicted RBP12.35□□□□□ -0.43
SKA1-202ENST00000398452 GPR148Q8TDV2 347 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 SLC7A6Q92536 515 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 YIPF6Q96EC8 236 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 PDCD1LG2Q9BQ51 273 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 BCL7BQ9BQE9 202 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 CHCHD6Q9BRQ6 235 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 SLC24A3Q9HC58 644 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 FAM206AQ9NX38 181 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 FRRS1LQ9P0K9 344 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 RSL24D1Q9UHA3 163 aaKnown RBP12.35□□□□□ -0.43
SKA1-202ENST00000398452 HHLA2Q9UM44 414 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 DHDHQ9UQ10 334 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 SPEF1Q9Y4P9 236 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 SLC25A15Q9Y619 301 aa12.35□□□□□ -0.43
SKA1-202ENST00000398452 POLEQ07864 2286 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 NKX2-6A6NCS4 301 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms