RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 GDF7Q7Z4P5 450 aa10.39□□□□□ -0.75
PTPN4-201ENST00000263708 SIAH1Q8IUQ4 282 aa10.39□□□□□ -0.75
PTPN4-201ENST00000263708 OR5M9Q8NGP3 310 aa10.39□□□□□ -0.75
PTPN4-201ENST00000263708 VRTNQ9H8Y1 702 aa10.39□□□□□ -0.75
PTPN4-201ENST00000263708 ICAM5Q9UMF0 924 aa10.39□□□□□ -0.75
PTPN4-201ENST00000263708 TRAPPC1Q9Y5R8 145 aa10.39□□□□□ -0.75
PTPN4-201ENST00000263708 JTBO76095 146 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 OPRM1P35372 400 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 OPALINQ96PE5 141 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 TDRD6O60522 2096 aaKnown RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 NUP98P52948 1817 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 A0A1B0GWA3 101 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 SPINK4O60575 86 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 SLC25A5P05141 298 aaKnown RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 SCG5P05408 212 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 C1SP09871 688 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 GPX3P22352 226 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 WASHC3Q9Y3C0 194 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 GCGP01275 180 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 SULT1A1P50225 295 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 RGS7BPQ6MZT1 257 aaPredicted RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 LSRQ86X29 649 aaPredicted RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 SLC38A9Q8NBW4 561 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 CIB3Q96Q77 187 aaPredicted RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 DDOQ99489 341 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 SLC25A21Q9BQT8 299 aaPredicted RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 MAGT1Q9H0U3 335 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 CLEC18AA5D8T8 446 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 TNFSF15O95150 251 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 NME1P15531 152 aaKnown RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 CLN3Q13286 438 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 BCDIN3DQ7Z5W3 292 aaKnown RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 CXorf67Q86X51 503 aaPredicted RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 CLEC18CQ8NCF0 446 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 OR2Z1Q8NG97 314 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 GNPNAT1Q96EK6 184 aaPredicted RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 CSF3RQ99062 836 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 OCEL1Q9H607 264 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 FAM24AA6NFZ4 105 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 APOBEC1P41238 236 aaKnown RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 HAAOP46952 286 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 OR6M1Q8NGM8 313 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 RNF2Q99496 336 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 MMP7P09237 267 aaPredicted RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 SPI1P17947 270 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 MTNR1BP49286 362 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 ETFDHQ16134 617 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 KISS1RQ969F8 398 aaPredicted RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 KIF13AQ9H1H9 1805 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 SNRPGP62308 76 aaKnown RBP10.38□□□□□ -0.75
PTPN4-201ENST00000263708 PIANPQ8IYJ0 282 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 CA5BP1Q8WTZ4 195 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 PIGMQ9H3S5 423 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 PPT2Q9UMR5 302 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 SNX11Q9Y5W9 270 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 SLC17A1Q14916 467 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 ZNF750Q32MQ0 723 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 FOXQ1Q9C009 403 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 CRISPLD2Q9H0B8 497 aa10.38□□□□□ -0.75
PTPN4-201ENST00000263708 FITM1A5D6W6 292 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 ZNF260Q3ZCT1 412 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 CBARPQ8N350 705 aaPredicted RBP10.37□□□□□ -0.75
PTPN4-201ENST00000263708 PTDSS2Q9BVG9 487 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 SDCBPO00560 298 aaPredicted RBP10.37□□□□□ -0.75
PTPN4-201ENST00000263708 OPN1MWP04001 364 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 OPN1MW2P0DN77 364 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 OPN1MW3P0DN78 364 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 FABP4P15090 132 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 INSM1Q01101 510 aaPredicted RBP10.37□□□□□ -0.75
PTPN4-201ENST00000263708 DUSP6Q16828 381 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 TCTN1Q2MV58 587 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 SCGB1D4Q6XE38 83 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 EIF4E3Q8N5X7 224 aaKnown RBP10.37□□□□□ -0.75
PTPN4-201ENST00000263708 GRAMD2BQ96HH9 432 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 ZNF354AO60765 605 aaPredicted RBP10.37□□□□□ -0.75
PTPN4-201ENST00000263708 IL5P05113 134 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 CCKARP32238 428 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 WDR88Q6ZMY6 472 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 CBLL1Q75N03 491 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 KLF16Q9BXK1 252 aaPredicted RBP10.37□□□□□ -0.75
PTPN4-201ENST00000263708 A0A1W2PNV4 684 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 MKRN2OSH3BPM6 223 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 MT-ATP6P00846 226 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 FBXO27Q8NI29 283 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 SPACA5Q96QH8 159 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 SIAEQ9HAT2 523 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 KNL1Q8NG31 2342 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 FAM90A27PA6NNH2 459 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 HTR3DQ70Z44 454 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 TAS1R1Q7RTX1 841 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 PRSS3P2Q8NHM4 247 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 CHST8Q9H2A9 424 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 PIK3C2AO00443 1686 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 LRP3O75074 770 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 OR2F2O95006 317 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 CHRM2P08172 466 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 SCARB1Q8WTV0 552 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 OR2A14Q96R47 310 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 NDUFB3O43676 98 aa10.37□□□□□ -0.75
PTPN4-201ENST00000263708 HSBP1O75506 76 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms