RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 DNASE1L1P49184 302 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 CLK1P49759 484 aaKnown RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 DAP3P51398 398 aaKnown RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 TMBIM6P55061 237 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 DSCR4P56555 118 aaPredicted RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 WNT4P56705 351 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR2B6P58173 313 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 FXYD6P3P58550 94 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 PLGLB1Q02325 96 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 GAGE1Q13065 139 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 GAGE4Q13068 117 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 MELKQ14680 651 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 TSTQ16762 297 aaKnown RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 ARMCX4Q5H9R4 360 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 SLC35D3Q5M8T2 416 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 ACER2Q5QJU3 275 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 DCAF10Q5QP82 559 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 SLC25A30Q5SVS4 291 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 SYT6Q5T7P8 510 aaPredicted RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 UBE2UQ5VVX9 321 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 GPR139Q6DWJ6 353 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 WDR73Q6P4I2 378 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 DNM1P34Q6PK57 102 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 ARSKQ6UWY0 536 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 TMPRSS11AQ6ZMR5 421 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 LINC00696Q6ZRV3 163 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 ASCL5Q7RTU5 278 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 HDDC2Q7Z4H3 204 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 FAM220AQ7Z4H9 259 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 VASH2Q86V25 355 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 MARCH9Q86YJ5 346 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 FADS6Q8N9I5 356 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 POMGNT2Q8NAT1 580 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 CYB561A3Q8NBI2 242 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 SLC37A3Q8NCC5 494 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 PROKR2Q8NFJ6 384 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 BBS1Q8NFJ9 593 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 KBTBD8Q8NFY9 601 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR10H4Q8NGA5 316 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR2T4Q8NH00 348 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR6S1Q8NH40 331 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR14L1PQ8NHC6 308 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 MOSPD2Q8NHP6 518 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 PAQR8Q8TEZ7 354 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 RNF138Q8WVD3 245 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 LIPHQ8WWY8 451 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 UFD1Q92890 307 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 C12orf43Q96C57 262 aaKnown RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 LGALS12Q96DT0 336 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZHX1-C8orf76Q96EF9 292 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 Q96M85 177 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 SFXN2Q96NB2 322 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 UHRF2Q96PU4 802 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR5B2Q96R09 309 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 MYCBPQ99417 103 aaPredicted RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 CNN2Q99439 309 aaKnown RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 TBX5Q99593 518 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 KLHDC3Q9BQ90 382 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 BCL7BQ9BQE9 202 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 UTP23Q9BRU9 249 aaKnown RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 DCUN1D5Q9BTE7 237 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 FUNDC2Q9BWH2 189 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 ANGPTL4Q9BY76 406 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR11A1Q9GZK7 315 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 RERGLQ9H628 205 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 TMEM185BQ9H7F4 350 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 MED20Q9H944 212 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 UBTD1Q9HAC8 227 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 FGF20Q9NP95 211 aaPredicted RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 EXOSC4Q9NPD3 245 aaKnown RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 CHST11Q9NPF2 352 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 FKBP14Q9NWM8 211 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 IL17BQ9UHF5 180 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 ENPP5Q9UJA9 477 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 FBXL2Q9UKC9 423 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 NPIPA1Q9UND3 350 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 RPH3AQ9Y2J0 694 aaPredicted RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 KLF13Q9Y2Y9 288 aaPredicted RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 ADAM18Q9Y3Q7 739 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 CHCHD2Q9Y6H1 151 aaPredicted RBP3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 CEPT1Q9Y6K0 416 aa3.34□□□□□ -1.87
HMGB3P20-201ENST00000417997 NCKAP5O14513 1909 aa3.34□□□□□ -1.88
HMGB3P20-201ENST00000417997 LOC100506127A0A0U1RQW1 187 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 PNMA8CA0A1B0GUJ8 204 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 A0A1W2PNV4 684 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 A0A1W2PPW3 197 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 TMEM129A0AVI4 362 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 DAPL1A0PJW8 107 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 CCDC182A6NF36 153 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 A6NIZ1 184 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 C12orf71A8MTZ7 269 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 ZNF670-ZNF695F2Z2N8 137 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 H7C1C5 153 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 CCRL2O00421 344 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 ARPC3O15145 178 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 SLC22A1O15245 554 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 SEC14L5O43304 696 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 AIREO43918 545 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 CBR3O75828 277 aa3.33□□□□□ -1.88
HMGB3P20-201ENST00000417997 TRAPPC6AO75865 159 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms