RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 ZNF436Q9C0F3 470 aaPredicted RBP4.05□□□□□ -1.76
SF3B1-202ENST00000409915 C20orf27Q9GZN8 174 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 VN1R1Q9GZP7 353 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 OPN3Q9H1Y3 402 aaPredicted RBP4.05□□□□□ -1.76
SF3B1-202ENST00000409915 DCSTAMPQ9H295 470 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 RIMS4Q9H426 269 aaPredicted RBP4.05□□□□□ -1.76
SF3B1-202ENST00000409915 MAGIXQ9H6Y5 334 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 TMEM185BQ9H7F4 350 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 WDR41Q9HAD4 459 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 GPR173Q9NS66 373 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 C19orf73Q9NVV2 129 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 MRPL22Q9NWU5 206 aaKnown RBP4.05□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF282Q9UDV7 671 aaPredicted RBP4.05□□□□□ -1.76
SF3B1-202ENST00000409915 MLXQ9UH92 298 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF490Q9ULM2 529 aaPredicted RBP4.05□□□□□ -1.76
SF3B1-202ENST00000409915 OR10H1Q9Y4A9 318 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 ATG4BQ9Y4P1 393 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.05□□□□□ -1.76
SF3B1-202ENST00000409915 FAM208BQ5VWN6 2430 aa4.05□□□□□ -1.76
SF3B1-202ENST00000409915 SCN3AQ9NY46 2000 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 KRTAP4-8A0A0G2JLE6 195 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 LRIT2A6NDA9 550 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 VSTM2BA6NLU5 285 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 IDSB3KWA1 339 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 PRSS46E5RG02 174 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 G3V2T6 193 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 MKRN2OSH3BPM6 223 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 K7EM74 188 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 M0QZK8 103 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 CHST10O43529 356 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 NME2P1O60361 137 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 LYPLA1O75608 230 aaPredicted RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 DFFBO76075 338 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ETHE1O95571 254 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 MBP02144 154 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 IL6RP08887 468 aaPredicted RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 HSD17B1P14061 328 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 PPP3CBP16298 524 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 C4BPBP20851 252 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 MAOAP21397 527 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 MSR1P21757 451 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 GATA3P23771 443 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 FPR3P25089 353 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 FASP25445 335 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 APOBEC3AP31941 199 aaPredicted RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 AHRP35869 848 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 RPS19P39019 145 aaKnown RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 SSR2P43308 183 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 AVPR1BP47901 424 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 TGM4P49221 684 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 RGS6P49758 472 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 PPT1P50897 306 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF84P51523 738 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 CLDN20P56880 219 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 SELENOVP59797 346 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 NUTF2P61970 127 aaKnown RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 RPS13P62277 151 aaKnown RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 CSNK2A1P68400 391 aaPredicted RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 BTN3A2P78410 334 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 EMX1Q04741 257 aaPredicted RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 SLAQ13239 276 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 FAM53BQ14153 422 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 CHI3L2Q15782 390 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 TOMM34Q15785 309 aaPredicted RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 KCNMB1Q16558 191 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 TATDN3Q17R31 274 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ANXA2RQ3ZCQ2 193 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 CHRFAM7AQ494W8 412 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF311Q5JNZ3 666 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 SLC35D3Q5M8T2 416 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 SAMD4BQ5PRF9 694 aaKnown RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF678Q5SXM1 525 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 TMEM236Q5W0B7 351 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 PLCXD3Q63HM9 321 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 B3GNTL1Q67FW5 361 aaPredicted RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 REP15Q6BDI9 236 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 HIST2H2AA3Q6FI13 130 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 LAIR2Q6ISS4 152 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 MED27Q6P2C8 311 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 NIPAL3Q6P499 406 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF474Q6S9Z5 364 aaPredicted RBP4.04□□□□□ -1.76
SF3B1-202ENST00000409915 SCIMPQ6UWF3 145 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 CD164L2Q6UWJ8 174 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 KIRREL2Q6UWL6 708 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 TMEM107Q6UX40 140 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF793Q6ZN11 406 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ZCCHC23Q6ZST2 131 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 ABHD13Q7L211 337 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 DPPA2Q7Z7J5 298 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 C10orf107Q8IVU9 208 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 CA13Q8N1Q1 262 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 LNX2Q8N448 690 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 CSNK2A3Q8NEV1 391 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 OR4F6Q8NGB9 312 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 OR8D4Q8NGM9 314 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 OR2T4Q8NH00 348 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 OR51Q1Q8NH59 317 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 KCNG3Q8TAE7 436 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 DTD1Q8TEA8 209 aa4.04□□□□□ -1.76
SF3B1-202ENST00000409915 RORBQ92753 470 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms