RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 SLC3A1Q07837 685 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 ZMAT1Q5H9K5 638 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 C16orf89Q6UX73 402 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 ZBTB46Q86UZ6 589 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 GJC3Q8NFK1 279 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 SLC26A10Q8NG04 563 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 ITLN1Q8WWA0 313 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 DDOQ99489 341 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 FN3KQ9H479 309 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 TMEM106BQ9NUM4 274 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 PTTG3PQ9NZH4 202 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 LOC105371242A0A075B767 164 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 PNPP00491 289 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 RENP00797 406 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 IGHV2-70P01814 119 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 SBK2P0C263 348 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 RAC2P15153 192 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 ZFP36P26651 326 aaKnown RBP17.51■□□□□ 0.39
SDC1-205ENST00000447124 COX10Q12887 443 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 TSPAN31Q12999 210 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 KRTAP27-1Q3LI81 207 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 SLC35F1Q5T1Q4 408 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 OR2T2Q6IF00 324 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 DNM1P34Q6PK57 102 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 CYP2R1Q6VVX0 501 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 FBXW12Q6X9E4 464 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 JAZF1Q86VZ6 243 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 OR5AS1Q8N127 324 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 ZNF283Q8N7M2 679 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 COQ7Q99807 217 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 GAL3ST1Q99999 423 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 OCEL1Q9H607 264 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 RPRD1BQ9NQG5 326 aaKnown RBP17.51■□□□□ 0.39
SDC1-205ENST00000447124 ATPIF1Q9UII2 106 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 TMCC3Q9ULS5 477 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 POLR1DQ9Y2S0 133 aa17.51■□□□□ 0.39
SDC1-205ENST00000447124 ISPDA4D126 451 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 DCTN3O75935 186 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 ATP6V1B2P21281 511 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 SPATS1Q496A3 300 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 ZNF362Q5T0B9 420 aaPredicted RBP17.5■□□□□ 0.39
SDC1-205ENST00000447124 SLC18B1Q6NT16 456 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 PGM2L1Q6PCE3 622 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 ZNF620Q6ZNG0 422 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 CFAP77Q6ZQR2 320 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 COLCA1Q6ZS62 124 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 NAA40Q86UY6 237 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 LINC00346Q8IVM7 164 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 FITM2Q8N6M3 262 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 SDR9C7Q8NEX9 313 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 OR52E2Q8NGJ4 325 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 ZNRF4Q8WWF5 429 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 COG8Q96MW5 612 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 SIGLEC11Q96RL6 698 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 EGLN3Q9H6Z9 239 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 MRPL22Q9NWU5 206 aaKnown RBP17.5■□□□□ 0.39
SDC1-205ENST00000447124 UBAP1Q9NZ09 502 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 LYVE1Q9Y5Y7 322 aa17.5■□□□□ 0.39
SDC1-205ENST00000447124 B2RBV5 119 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 IDH3BO43837 385 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 GGT2P36268 569 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 IFNGR2P38484 337 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 RGS6P49758 472 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 MXRA7P84157 204 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 PPP1R8Q12972 351 aaKnown RBP17.49■□□□□ 0.39
SDC1-205ENST00000447124 ZNF770Q6IQ21 691 aaPredicted RBP17.49■□□□□ 0.39
SDC1-205ENST00000447124 PEG10Q86TG7 708 aaKnown RBP17.49■□□□□ 0.39
SDC1-205ENST00000447124 OR9Q2Q8NGE9 314 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 OR4C15Q8NGM1 316 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 APOBEC3DQ96AK3 386 aaPredicted RBP17.49■□□□□ 0.39
SDC1-205ENST00000447124 BTBD10Q9BSF8 475 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 HDHD2Q9H0R4 259 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 PNRC2Q9NPJ4 139 aaKnown RBP17.49■□□□□ 0.39
SDC1-205ENST00000447124 IL19Q9UHD0 177 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 OPN4Q9UHM6 478 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 TANC2Q9HCD6 1990 aa17.49■□□□□ 0.39
SDC1-205ENST00000447124 TCRBV5S2A0A599 114 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 H0YL77 283 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 J3QW42 95 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 TNFRSF11BO00300 401 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 KRT36O76013 467 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 GASTP01350 101 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 TNFRSF1AP19438 455 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 TNFSF4P23510 183 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 LCN2P80188 198 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.48■□□□□ 0.39
SDC1-205ENST00000447124 CLEC12AQ5QGZ9 265 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 SHQ1Q6PI26 577 aaKnown RBP17.48■□□□□ 0.39
SDC1-205ENST00000447124 LRRC28Q86X40 367 aaPredicted RBP17.48■□□□□ 0.39
SDC1-205ENST00000447124 ATG16L2Q8NAA4 619 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 OR8G5Q8NG78 346 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 OR5L1Q8NGL2 311 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 NSL1Q96IY1 281 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 OR2V2Q96R30 315 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 CCT8L2Q96SF2 557 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 C1QTNF5Q9BXJ0 243 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 PLA2G12AQ9BZM1 189 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 WDR76Q9H967 626 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 NDE1Q9NXR1 346 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 ACTR3BQ9P1U1 418 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms