RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SAP25Q8TEE9 199 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 NUS1Q96E22 293 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 KTI12Q96EK9 354 aaPredicted RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 EGLN3Q9H6Z9 239 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 RHOFQ9HBH0 211 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 IL26Q9NPH9 171 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 GAR1Q9NY12 217 aaKnown RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 PCYT1BQ9Y5K3 369 aaPredicted RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 SLCO1B1Q9Y6L6 691 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 V9GY05 133 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 CACNA1EQ15878 2313 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 LRIT2A6NDA9 550 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 CXorf65A6NEN9 183 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 C22orf46C9J442 243 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 RNASEK-C17orf49H0YIS7 233 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 CLDN4O14493 209 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 BHLHE40O14503 412 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 FCGR3AP08637 254 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 CD37P11049 281 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 SDHBP21912 280 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 HTR2CP28335 458 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 PPICP45877 212 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 SUCLG1P53597 346 aaKnown RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 CLN3Q13286 438 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 INSL4Q14641 139 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 ANKRD16Q6P6B7 361 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 BTNL8Q6UX41 500 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 H1FNTQ75WM6 255 aaPredicted RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 PEG10Q86TG7 708 aaKnown RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 VASH2Q86V25 355 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 VRK3Q8IV63 474 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 OR4C16Q8NGL9 310 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 OR1J1Q8NGS3 322 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 OR5AK2Q8NH90 309 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 RNASEH2CQ8TDP1 164 aaKnown RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 KCNE4Q8WWG9 221 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 C14orf79Q96F83 325 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 TIMM29Q9BSF4 260 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 WDR13Q9H1Z4 485 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 ADGRL4Q9HBW9 690 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 SIRT3Q9NTG7 399 aaPredicted RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 TMEM140Q9NV12 185 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 ICAM5Q9UMF0 924 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 PCDHGC4Q9Y5F7 938 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 A0A087WWC5 75 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 A0A1B0GV90 55 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 C5orf51A6NDU8 294 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 OR2AT4A6NND4 320 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 RCBTB2O95199 551 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 ETHE1O95571 254 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 GAPDHP04406 335 aaKnown RBP4.74□□□□□ -1.65
USP28-213ENST00000544967 CEACAM5P06731 702 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 OR4E1P0C645 316 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 CD59P13987 128 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 CBR1P16152 277 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 ACKR3P25106 362 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 CD38P28907 300 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 EPHA8P29322 1005 aaPredicted RBP4.74□□□□□ -1.65
USP28-213ENST00000544967 PPT1P50897 306 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 F2RL1P55085 397 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 DLK1P80370 383 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 CDK3Q00526 305 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 NHLH2Q02577 135 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 ISXQ2M1V0 245 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 C2orf68Q2NKX9 166 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 PHF19Q5T6S3 580 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 B3GLCTQ6Y288 498 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 WDR88Q6ZMY6 472 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 SLC24A4Q8NFF2 622 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 STEAP2Q8NFT2 490 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 OR4D9Q8NGE8 314 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 OR52L1Q8NGH7 329 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 OR2G2Q8NGZ5 317 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 GPR148Q8TDV2 347 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 ST7LQ8TDW4 575 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 GHSRQ92847 366 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 SLC41A3Q96GZ6 507 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 AQP10Q96PS8 301 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 RSPO3Q9BXY4 272 aaPredicted RBP4.74□□□□□ -1.65
USP28-213ENST00000544967 SLITRK2Q9H156 845 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 OR52A5Q9H2C5 316 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 TAAR2Q9P1P5 351 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 ATG4BQ9Y4P1 393 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 NCOR1O75376 2440 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 A0A0U1RQV5 110 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 LNP1A1A4G5 178 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 HCRTR2O43614 444 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 CER1O95813 267 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 EPPINO95925 133 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 SFTA3P0C7M3 94 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 SRMP19623 302 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 ACP1P24666 158 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 WASP42768 502 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 SULT1A2P50226 295 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 RPS13P62277 151 aaKnown RBP4.74□□□□□ -1.65
USP28-213ENST00000544967 MEF2DQ14814 521 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 PTPRRQ15256 657 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 CEBPEQ15744 281 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 HAGHQ16775 308 aa4.74□□□□□ -1.65
USP28-213ENST00000544967 TRIM61Q5EBN2 209 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms