RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 RPL27P61353 136 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 C1orf174Q8IYL3 243 aa8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 SGK3Q96BR1 496 aa8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 KCTD12Q96CX2 325 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 RASL10BQ96S79 203 aa8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 C19orf53Q9UNZ5 99 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 CLN5O75503 358 aa8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 ARG1P05089 322 aa8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 FGF5P12034 268 aa8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 DCXRQ7Z4W1 244 aa8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 SLC35E1Q96K37 410 aa8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 NICN1Q9BSH3 213 aa8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 POTEKPQ9BYX7 375 aa8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 SSU72Q9NP77 194 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 NKX1-2Q9UD57 310 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 EXO1Q9UQ84 846 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 ASXL3Q9C0F0 2248 aa8.31□□□□□ -1.08
LIMCH1-202ENST00000381753 SERPINE3A8MV23 424 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 PDLIM3Q53GG5 364 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 ZNF773Q6PK81 442 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 ZNF662Q6ZS27 426 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 UTS2BQ765I0 119 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 ANKRD13BQ86YJ7 626 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 OR5D13Q8NGL4 314 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 OR13C2Q8NGS9 318 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 NT5CQ8TCD5 201 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 LINC00615Q96LM1 132 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 TREX2Q9BQ50 279 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 DLL4Q9NR61 685 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 MRPL15Q9P015 296 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 WNT1P04628 370 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 RAP2BP61225 183 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 CXorf66Q5JRM2 361 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 SLC25A30Q5SVS4 291 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 OR2T2Q6IF00 324 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 CCDC144NLQ6NUI1 221 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 ACOT11Q8WXI4 607 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 LYSMD1Q96S90 227 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 TMUB1Q9BVT8 246 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 ASH2LQ9UBL3 628 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 RBBP9O75884 186 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 AQP8O94778 261 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 CD99P14209 185 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 TNFRSF1BP20333 461 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 MYF6P23409 242 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 CD97P48960 835 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 PGFP49763 221 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 CSRP3P50461 194 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 ZNF273Q14593 569 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 TSEN54Q7Z6J9 526 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 OR13C9Q8NGT0 318 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 GON7Q9BXV9 100 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 OR52D1Q9H346 318 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 ARMC1Q9NVT9 282 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 AIG1Q9NVV5 245 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 ZNF205O95201 554 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 ONECUT2O95948 504 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 CD59P13987 128 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 HTN1P15515 57 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 CD33P20138 364 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 CDK2P24941 298 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 CXCR4P61073 352 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 ERHP84090 104 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 CPOQ8IVL8 374 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 MAELQ96JY0 434 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 SUCNR1Q9BXA5 334 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 TGM6O95932 706 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 PRPH2P23942 346 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 PSMB10P40306 273 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 ATP4BP51164 291 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 MOGAT3Q86VF5 341 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 OR13J1Q8NGT2 312 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 SLC25A28Q96A46 364 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 SYT4Q9H2B2 425 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 TMEM231Q9H6L2 316 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 C7orf69Q9H7B7 122 aa8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 HEYLQ9NQ87 328 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-202ENST00000381753 MARF1Q9Y4F3 1742 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 XPNPEP2O43895 674 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 PRB1P04280 392 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 PSKH1P11801 424 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 S100PP25815 95 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 ECSCRQ19T08 205 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 COX15Q7KZN9 410 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SSX9Q7RTT3 188 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 RNASE6Q93091 150 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 CMBLQ96DG6 245 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 PDLIM5Q96HC4 596 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SORCS2Q96PQ0 1159 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SELENOIQ9C0D9 397 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 THYN1Q9P016 225 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 PRELID1Q9Y255 219 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 P2RY10O00398 339 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 RRN3P1Q2M238 152 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 PPP1R32Q7Z5V6 425 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 OR6K3Q8NGY3 331 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 ZNF675Q8TD23 568 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 WNT2BQ93097 391 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 CXXC4Q9H2H0 198 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 TREM1Q9NP99 234 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms