RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CD8B2A6NJW9 211 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 SLC3A1Q07837 685 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 TIMM50Q3ZCQ8 353 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 CCDC58Q4VC31 144 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 RTL6Q6ICC9 239 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 SEM1Q6ZVN7 128 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 CD163Q86VB7 1156 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 ZNF100Q8IYN0 542 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 LRRC18Q8N456 261 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 NDNFQ8TB73 568 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 SLAMF6Q96DU3 332 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 DCLRE1CQ96SD1 692 aaKnown RBP16.37■□□□□ 0.21
CLN3-206ENST00000360019 TMED9Q9BVK6 235 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 SLC25A18Q9H1K4 315 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 SIAEQ9HAT2 523 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 ASF1BQ9NVP2 202 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 PRSS50Q9UI38 385 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 LRP12Q9Y561 859 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 SMG1Q96Q15 3661 aaKnown RBP16.37■□□□□ 0.21
CLN3-206ENST00000360019 RPL36A-HNRNPH2H7BZ11 118 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 B4GALT1P15291 398 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 NPR2P20594 1047 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 TGM4P49221 684 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 FOXG1P55316 489 aaPredicted RBP16.36■□□□□ 0.21
CLN3-206ENST00000360019 FAM27BQ5VT28 67 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 OR7E24Q6IFN5 339 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 RPL22L1Q6P5R6 122 aaKnown RBP16.36■□□□□ 0.21
CLN3-206ENST00000360019 CD200R1LQ6Q8B3 271 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 FAM214BQ7L5A3 538 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 OR2AJ1Q8NGZ0 328 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 FAM57AQ8TBR7 257 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 RPS4Y2Q8TD47 263 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 SMIM19Q96E16 107 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 FAM215AQ9Y5M1 114 aa16.36■□□□□ 0.21
CLN3-206ENST00000360019 SLC22A1O15245 554 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 RER1O15258 196 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 WDR1O75083 606 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 GABRA1P14867 456 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 OPRL1P41146 370 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 FABP5Q01469 135 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 KLRB1Q12918 225 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 NFATC3Q12968 1075 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 INSL4Q14641 139 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 DCUN1D5Q9BTE7 237 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 EXOSC4Q9NPD3 245 aaKnown RBP16.35■□□□□ 0.21
CLN3-206ENST00000360019 PNRC2Q9NPJ4 139 aaKnown RBP16.35■□□□□ 0.21
CLN3-206ENST00000360019 FBXL3Q9UKT7 428 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 ARHGAP21Q5T5U3 1957 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 MBD3L4A6NDZ8 208 aaPredicted RBP16.35■□□□□ 0.21
CLN3-206ENST00000360019 MBD3L3A6NE82 208 aaPredicted RBP16.35■□□□□ 0.21
CLN3-206ENST00000360019 MBD3L5A6NJ08 208 aaPredicted RBP16.35■□□□□ 0.21
CLN3-206ENST00000360019 HSPB2A8KAH6 182 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 ZNF587BE7ETH6 402 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 OR3A2P47893 321 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 GDI2P50395 445 aaKnown RBP16.35■□□□□ 0.21
CLN3-206ENST00000360019 MRPL28Q13084 256 aaKnown RBP16.35■□□□□ 0.21
CLN3-206ENST00000360019 STK11Q15831 433 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 HSPB2Q16082 182 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 DEGS2Q6QHC5 323 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 SLC22A24Q8N4F4 322 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 MBD3L2Q8NHZ7 208 aaPredicted RBP16.35■□□□□ 0.21
CLN3-206ENST00000360019 GHSRQ92847 366 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 FBXO17Q96EF6 278 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 SH3GL3Q99963 347 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 HDHD5Q9BXW7 423 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 CENPMQ9NSP4 180 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 UPB1Q9UBR1 384 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 MALT1Q9UDY8 824 aa16.35■□□□□ 0.21
CLN3-206ENST00000360019 TRBV2A0A0J9YWF9 115 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 FIGNL2A6NMB9 653 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 PNPP00491 289 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 ABOP16442 354 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 ZNF182P17025 639 aaPredicted RBP16.34■□□□□ 0.21
CLN3-206ENST00000360019 CD53P19397 219 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 KIR2DL2P43627 348 aaPredicted RBP16.34■□□□□ 0.21
CLN3-206ENST00000360019 RIDAP52758 137 aaKnown RBP16.34■□□□□ 0.21
CLN3-206ENST00000360019 FAPQ12884 760 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 FOXF2Q12947 444 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 SF3B4Q15427 424 aaKnown RBP eCLIP16.34■□□□□ 0.212e-7■■■■□ 24.8
CLN3-206ENST00000360019 C9orf135Q5VTT2 229 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 OR2A2Q6IF42 318 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 GDPGP1Q6ZNW5 385 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 UBE2J2Q8N2K1 259 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 RPRMLQ8N4K4 120 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 HAVCR2Q8TDQ0 301 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 PDCD1LG2Q9BQ51 273 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 TXNL4BQ9NX01 149 aaKnown RBP16.34■□□□□ 0.21
CLN3-206ENST00000360019 PTTG2Q9NZH5 202 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 FRRS1LQ9P0K9 344 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 SSR3Q9UNL2 185 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 EMC9Q9Y3B6 208 aa16.34■□□□□ 0.21
CLN3-206ENST00000360019 DVL2O14641 736 aa16.33■□□□□ 0.21
CLN3-206ENST00000360019 ZNF254O75437 659 aa16.33■□□□□ 0.21
CLN3-206ENST00000360019 SRSF10O75494 262 aaKnown RBP16.33■□□□□ 0.21
CLN3-206ENST00000360019 TOXO94900 526 aa16.33■□□□□ 0.21
CLN3-206ENST00000360019 HLA-DPB1P04440 258 aa16.33■□□□□ 0.21
CLN3-206ENST00000360019 PTGER4P35408 488 aa16.33■□□□□ 0.21
CLN3-206ENST00000360019 HIST1H3AP68431 136 aa16.33■□□□□ 0.21
CLN3-206ENST00000360019 ARF1P84077 181 aaKnown RBP16.33■□□□□ 0.21
CLN3-206ENST00000360019 ALKBH1Q13686 389 aaKnown RBP16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms