RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 ABHD13Q7L211 337 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 OR52R1Q8NGF1 315 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 WDR76Q9H967 626 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 PHPT1Q9NRX4 125 aaPredicted RBP11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 RCC2Q9P258 522 aaKnown RBP11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 HCFC2Q9Y5Z7 792 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 EDDM13A0A1B0GTR0 161 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 METTL21EPA6NDL7 271 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 RENP00797 406 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 KLK3P07288 261 aaPredicted RBP11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 RAB2AP61019 212 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 PMPCAQ10713 525 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 RNF212Q495C1 297 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 WDR38Q5JTN6 314 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 EIF5AL1Q6IS14 154 aaKnown RBP11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 ADAMTSL4Q6UY14 1074 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 TRAPPC6BQ86SZ2 158 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 ZNF561Q8N587 486 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 OR4N2Q8NGD1 307 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 OR13C8Q8NGS7 320 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 FAM46BQ96A09 425 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 SLC41A2Q96JW4 573 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 DAPP1Q9UN19 280 aa11.62□□□□□ -0.55
SFSWAP-209ENST00000540469 FGF16O43320 207 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 HPGDP15428 266 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 ECH1Q13011 328 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 HNRNPA1L2Q32P51 320 aaKnown RBP11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 LINC01590Q5TEZ4 76 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 VN1R4Q7Z5H5 301 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 BIVMQ86UB2 503 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 EDARADDQ8WWZ3 215 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 COX14Q96I36 57 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 SERINC2Q96SA4 455 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 INTS14Q96SY0 518 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 LAT2Q9GZY6 243 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 RGCCQ9H4X1 137 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 METTL8Q9H825 291 aaKnown RBP11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 DNAJB12Q9NXW2 375 aaKnown RBP11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 TMEM14AQ9Y6G1 99 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 GON4LQ3T8J9 2241 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 COLCA2A8K830 154 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 ARPC3O15145 178 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 CRHP06850 196 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 SPARCP09486 303 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 P2RY2P41231 377 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 WASP42768 502 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 RPS15AP62244 130 aaKnown RBP11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 MESP2Q0VG99 397 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 FHL1Q13642 323 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 MEP1BQ16820 701 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 DNM1P46Q6ZS02 220 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 C12orf40Q86WS4 652 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 PPP1R14AQ96A00 147 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 SLC25A44Q96H78 314 aaPredicted RBP11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 DCBLD2Q96PD2 775 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 STACQ99469 402 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 PARP12Q9H0J9 701 aaKnown RBP11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 MBNL1Q9NR56 388 aaKnown RBP11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 LPAR3Q9UBY5 353 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 PCDHGA1Q9Y5H4 931 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 A0A1B0GV90 55 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 A6NLC8 198 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 PRRT4C9JH25 899 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 DCTN6O00399 190 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 ST6GAL1P15907 406 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 ACAA2P42765 397 aaKnown RBP11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 BIKQ13323 160 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 GPR18Q14330 331 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 EBPQ15125 230 aaKnown RBP11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 SLC9A3R2Q15599 337 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 GVQW1Q8N7I0 195 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 C15orf54Q8N8G6 183 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 OR5T3Q8NGG3 340 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 NAA11Q9BSU3 229 aaPredicted RBP11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 SLCO5A1Q9H2Y9 848 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 TAS2R4Q9NYW5 299 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 KCNG2Q9UJ96 466 aa11.61□□□□□ -0.55
SFSWAP-209ENST00000540469 LRP3O75074 770 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 CD74P04233 296 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 CD14P08571 375 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 CT62P0C5K7 136 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 NUDCD2Q8WVJ2 157 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 RHOVQ96L33 236 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 ZNF587Q96SQ5 575 aaPredicted RBP11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 ADH1AP07327 375 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 DAOP14920 347 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 ZBTB25P24278 435 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 TMPPEQ6ZT21 453 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 SLC25A42Q86VD7 318 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 ZNF595Q8IYB9 648 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 WFIKKN2Q8TEU8 576 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 MITD1Q8WV92 249 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 RBM18Q96H35 190 aaKnown RBP11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 C4orf45Q96LM5 186 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 PAPOLGQ9BWT3 736 aaKnown RBP11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 SRMSQ9H3Y6 488 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 KLK13Q9UKR3 277 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 WIF1Q9Y5W5 379 aa11.6□□□□□ -0.55
SFSWAP-209ENST00000540469 MPDZO75970 2070 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms