RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 GAGE1Q13065 139 aa12.52□□□□□ -0.41
HDAC1-206ENST00000476391 ZNF674Q2M3X9 581 aa12.52□□□□□ -0.41
HDAC1-206ENST00000476391 THEM4Q5T1C6 240 aa12.52□□□□□ -0.41
HDAC1-206ENST00000476391 OR5AK2Q8NH90 309 aa12.52□□□□□ -0.41
HDAC1-206ENST00000476391 OR5K2Q8NHB8 316 aa12.52□□□□□ -0.41
HDAC1-206ENST00000476391 TERB2Q8NHR7 220 aa12.52□□□□□ -0.41
HDAC1-206ENST00000476391 CCDC74AQ96AQ1 378 aa12.52□□□□□ -0.41
HDAC1-206ENST00000476391 POM121Q96HA1 1249 aa12.52□□□□□ -0.41
HDAC1-206ENST00000476391 PACRGQ96M98 296 aaPredicted RBP12.52□□□□□ -0.41
HDAC1-206ENST00000476391 KCNJ16Q9NPI9 418 aa12.52□□□□□ -0.41
HDAC1-206ENST00000476391 FARSAQ9Y285 508 aaKnown RBP12.52□□□□□ -0.41
HDAC1-206ENST00000476391 GOLT1BQ9Y3E0 138 aa12.52□□□□□ -0.41
HDAC1-206ENST00000476391 TRAV27A0A087WT01 109 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 SMCO3A2RU48 225 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 SYT7O43581 403 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 CYTIPO60759 359 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 ZNF432O94892 652 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 OR8G3PP0DMU2 310 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 FABP4P15090 132 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 SOX2P48431 317 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 ARRB1P49407 418 aaPredicted RBP12.51□□□□□ -0.41
HDAC1-206ENST00000476391 DIO1P49895 249 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 SKP1P63208 163 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 SSPNQ14714 243 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 JOSD1Q15040 202 aaPredicted RBP12.51□□□□□ -0.41
HDAC1-206ENST00000476391 AKR1C8PQ5T2L2 129 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 GPR137CQ8N3F9 429 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 OR52E2Q8NGJ4 325 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 CASTOR1Q8WTX7 329 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 RNF166Q96A37 237 aaPredicted RBP12.51□□□□□ -0.41
HDAC1-206ENST00000476391 DDA1Q9BW61 102 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 MED31Q9Y3C7 131 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 PCYT1BQ9Y5K3 369 aaPredicted RBP12.51□□□□□ -0.41
HDAC1-206ENST00000476391 TRAV8-7A0A075B6U6 113 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 C9J4A7 227 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 EREGO14944 169 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 AIFM1O95831 613 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 GPANK1O95872 356 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 CST4P01036 141 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 CSTBP04080 98 aaKnown RBP12.51□□□□□ -0.41
HDAC1-206ENST00000476391 TACSTD2P09758 323 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 ZNF25P17030 456 aaPredicted RBP12.51□□□□□ -0.41
HDAC1-206ENST00000476391 ID4P47928 161 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 PRLHRP49683 370 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 C2orf76Q3KRA6 126 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 EIPR1Q53HC9 387 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 TMEM268Q5VZI3 342 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 TTLL10Q6ZVT0 673 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 OR2AP1Q8NGE2 309 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 OR51A7Q8NH64 312 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 SUSD6Q92537 303 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 WDR92Q96MX6 357 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 ATG101Q9BSB4 218 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 SLC35B3Q9H1N7 401 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 SRMSQ9H3Y6 488 aa12.51□□□□□ -0.41
HDAC1-206ENST00000476391 TRBV5-7A0A0A0MS05 114 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 DVL1O14640 695 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 PHOX2AO14813 284 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 DLEU1O43261 78 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 EFSO43281 561 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 DOK2O60496 412 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 ZIC2O95409 532 aaPredicted RBP12.5□□□□□ -0.41
HDAC1-206ENST00000476391 PET100P0DJ07 73 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 RAB6AP20340 208 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 IGFALSP35858 605 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 BPIFB3P59826 476 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 SLC10A1Q14973 349 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 PRAMEF14Q5SWL7 426 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 ZNF684Q5T5D7 378 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 GFI1BQ5VTD9 330 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 RPL7L1Q6DKI1 246 aaKnown RBP12.5□□□□□ -0.41
HDAC1-206ENST00000476391 HSD17B11Q8NBQ5 300 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 FAM3DQ96BQ1 224 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 INSM2Q96T92 566 aaPredicted RBP12.5□□□□□ -0.41
HDAC1-206ENST00000476391 NUMA1Q14980 2115 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 FCMRO60667 390 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 ERCC1P07992 297 aaPredicted RBP12.5□□□□□ -0.41
HDAC1-206ENST00000476391 PBX2P40425 430 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 CD200P41217 278 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 MOGAT2Q3SYC2 334 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 CTXN3Q4LDR2 81 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 SLC39A5Q6ZMH5 540 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 ZNF836Q6ZNA1 936 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 UBE3DQ7Z6J8 389 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 ZNF664Q8N3J9 261 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 LMNTD1Q8N9Z9 388 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 OR51L1Q8NGJ5 315 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 CD300LFQ8TDQ1 290 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 DTD1Q8TEA8 209 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 PTCHD1Q96NR3 888 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 EIF5A2Q9GZV4 153 aaKnown RBP12.5□□□□□ -0.41
HDAC1-206ENST00000476391 MTHFD2LQ9H903 347 aaPredicted RBP12.5□□□□□ -0.41
HDAC1-206ENST00000476391 TMED7Q9Y3B3 224 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 MTCH2Q9Y6C9 303 aa12.5□□□□□ -0.41
HDAC1-206ENST00000476391 COL4A3Q01955 1670 aa12.49□□□□□ -0.41
HDAC1-206ENST00000476391 COCHO43405 550 aa12.49□□□□□ -0.41
HDAC1-206ENST00000476391 LYPD3O95274 346 aa12.49□□□□□ -0.41
HDAC1-206ENST00000476391 GAPDHP04406 335 aaKnown RBP12.49□□□□□ -0.41
HDAC1-206ENST00000476391 PRKAR2AP13861 404 aaKnown RBP12.49□□□□□ -0.41
HDAC1-206ENST00000476391 ZNF28P17035 718 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms