RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 NADK2Q4G0N4 442 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 DCST2Q5T1A1 773 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 FAM214BQ7L5A3 538 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 DNAJC22Q8N4W6 341 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ADAD2Q8NCV1 583 aaKnown RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 BPIFB6Q8NFQ5 453 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ZNF480Q8WV37 535 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 POLR2J2Q9GZM3 115 aaKnown RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 ZNF703Q9H7S9 590 aaPredicted RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 PLEKHF2Q9H8W4 249 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ERVK13-1Q9NX77 482 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 DNAJC27Q9NZQ0 273 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 PRRC2BQ5JSZ5 2229 aaKnown RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 A0A0A6YYJ9 748 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 C9JVG2 144 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 J3QLI3 93 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ARPC3O15145 178 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ADAM12O43184 909 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 MPZL1O95297 269 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SOX14O95416 240 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 FBXO45P0C2W1 286 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 FAM157BP0CG42 384 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 GTF2F2P13984 249 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 MPGP29372 298 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 IL12AP29459 219 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 MDH1P40925 334 aaKnown RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 RFC3P40938 356 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 RNF4P78317 190 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 MAT1AQ00266 395 aaKnown RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 ZNF45Q02386 682 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 HABP2Q14520 560 aaPredicted RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 QPRTQ15274 297 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SHISA2Q6UWI4 295 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 CRELD2Q6UXH1 353 aaPredicted RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 EIF1ADQ8N9N8 165 aaKnown RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 ZNF775Q96BV0 537 aaPredicted RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 DUX5Q96PT3 197 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 INPP5KQ9BT40 448 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ABHD14AQ9BUJ0 271 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 C1QTNF4Q9BXJ3 329 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 MMP27Q9H306 513 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ZNF552Q9H707 407 aaPredicted RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 ACP6Q9NPH0 428 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SLC6A13Q9NSD5 602 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 TVP23BQ9NYZ1 205 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 MED11Q9P086 117 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ZNF629Q9UEG4 869 aaPredicted RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 COQ4Q9Y3A0 265 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 STYXL1Q9Y6J8 313 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 WASH4PA8MWX3 477 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SOCS2O14508 198 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SOCS6O14544 535 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ETHE1O95571 254 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 GKN3PP0CG01 181 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 CGB7P0DN87 165 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 RRASP10301 218 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SLC2A2P11168 524 aaPredicted RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 PIGAP37287 484 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 EFNA4P52798 201 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 GFERP55789 205 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 OR10A3P58181 314 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SLC35A2P78381 396 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 DGUOKQ16854 277 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 HYAL4Q2M3T9 481 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 MFSD12Q6NUT3 480 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 LEG1Q6P5S2 330 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 GSG1LQ6UXU4 331 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 TRILQ7L0X0 811 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 UBAC2Q8NBM4 344 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 OR1L1Q8NH94 360 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ACTRT1Q8TDG2 376 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SSMEM1Q8WWF3 244 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 OIT3Q8WWZ8 545 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SLCO2A1Q92959 643 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ADIPOR1Q96A54 375 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 TPT1P8Q9HAU6 139 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 PRSS50Q9UI38 385 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 CCDC168Q8NDH2 2452 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 LOC390937A0A1W2PQ73 354 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 LEUTXA8MZ59 168 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 C1QTNF9BB2RNN3 333 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 M0QX08 132 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 HSPB6O14558 160 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ABLIM1O14639 778 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 AHCYL1O43865 530 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 NCR1O76036 304 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 C1QTNF9P0C862 333 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ARSBP15848 533 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 EPHA2P29317 976 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 CALCRP30988 508 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 KCNJ3P48549 501 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 CDKN2DP55273 166 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 KCNJ10P78508 379 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SOX4Q06945 474 aaPredicted RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 PKP1Q13835 747 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 NSUN5P1Q3KNT7 163 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 PXDC1Q5TGL8 231 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 AWAT2Q6E213 333 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ZCCHC23Q6ZST2 131 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms