RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 GMPPAQ96IJ6 420 aaPredicted RBP16.4■□□□□ 0.22
CLN3-206ENST00000360019 CDADC1Q9BWV3 514 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 LINC00470Q9BZP3 86 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 NELFAQ9H3P2 528 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 GPR35Q9HC97 309 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 SLC7A10Q9NS82 523 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 ST6GALNAC2Q9UJ37 374 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 IKZF2Q9UKS7 526 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 TRIM64BA6NI03 449 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 SS18L1O75177 396 aaPredicted RBP16.4■□□□□ 0.22
CLN3-206ENST00000360019 KRT8P05787 483 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 PSMB10P40306 273 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 ZNF84P51523 738 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 RPS25P62851 125 aaKnown RBP16.4■□□□□ 0.22
CLN3-206ENST00000360019 ROM1Q03395 351 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 SGCAQ16586 387 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 LIPNQ5VXI9 398 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 SPATC1Q76KD6 591 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 KCTD20Q7Z5Y7 419 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 TEX19Q8NA77 164 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 C9orf106Q8NAJ2 232 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 CPT1CQ8TCG5 803 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 APH1AQ96BI3 265 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 SNRNP40Q96DI7 357 aaKnown RBP16.4■□□□□ 0.22
CLN3-206ENST00000360019 MAP6Q96JE9 813 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 MYCBPQ99417 103 aaPredicted RBP16.4■□□□□ 0.22
CLN3-206ENST00000360019 BCL7BQ9BQE9 202 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 B3GAT2Q9NPZ5 323 aa16.4■□□□□ 0.22
CLN3-206ENST00000360019 GPX5O75715 221 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 MSR1P21757 451 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 PCSK6P29122 969 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 TGFBR1P36897 503 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 CRYBB2P43320 205 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 GBX2P52951 348 aaPredicted RBP16.39■□□□□ 0.21
CLN3-206ENST00000360019 TAS2R43P59537 309 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 VBP1P61758 197 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 NCS1P62166 190 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 SIRPAP78324 504 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 ROR2Q01974 943 aaKnown RBP16.39■□□□□ 0.21
CLN3-206ENST00000360019 GUSBP1Q15486 140 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 CEACAM16Q2WEN9 425 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 PRR30Q53SZ7 412 aaPredicted RBP16.39■□□□□ 0.21
CLN3-206ENST00000360019 DMKNQ6E0U4 476 aaPredicted RBP16.39■□□□□ 0.21
CLN3-206ENST00000360019 ZNF679Q8IYX0 411 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 GCNT2Q8N0V5 402 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 YIPF7Q8N8F6 280 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 HSD17B8Q92506 261 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 WNT2BQ93097 391 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 TMEM203Q969S6 136 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 TRMT61AQ96FX7 289 aaKnown RBP16.39■□□□□ 0.21
CLN3-206ENST00000360019 TM9SF2Q99805 663 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 SLX1AQ9BQ83 275 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 CHCHD6Q9BRQ6 235 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 ZNF416Q9BWM5 594 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 ELOVL3Q9HB03 270 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 ASH2LQ9UBL3 628 aa16.39■□□□□ 0.21
CLN3-206ENST00000360019 PLPP2O43688 288 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 TMCC2O75069 709 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 PSMA1P25786 263 aaKnown RBP16.38■□□□□ 0.21
CLN3-206ENST00000360019 GABRA5P31644 462 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 GUCA1AP43080 201 aaPredicted RBP16.38■□□□□ 0.21
CLN3-206ENST00000360019 LSM6P62312 80 aaKnown RBP16.38■□□□□ 0.21
CLN3-206ENST00000360019 MRPS34P82930 218 aaKnown RBP16.38■□□□□ 0.21
CLN3-206ENST00000360019 GPR50Q13585 617 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 ENDOGQ14249 297 aaKnown RBP16.38■□□□□ 0.21
CLN3-206ENST00000360019 SPCS2Q15005 226 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 CDK5R1Q15078 307 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 NSUN5P2Q63ZY6 315 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 KCTD18Q6PI47 426 aaPredicted RBP16.38■□□□□ 0.21
CLN3-206ENST00000360019 ARL9Q6T311 187 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 CFAP77Q6ZQR2 320 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 FAM220AQ7Z4H9 259 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 EGFL6Q8IUX8 553 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 PGLYRP3Q96LB9 341 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 CENPOQ9BU64 300 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 RNF167Q9H6Y7 350 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 C12orf49Q9H741 205 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 GLRX2Q9NS18 164 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 TMEM38BQ9NVV0 291 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 GDF2Q9UK05 429 aaPredicted RBP16.38■□□□□ 0.21
CLN3-206ENST00000360019 STUB1Q9UNE7 303 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 POLR1DQ9Y2S0 133 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 RP1L1Q8IWN7 2480 aaPredicted RBP16.38■□□□□ 0.21
CLN3-206ENST00000360019 NCOA6Q14686 2063 aaPredicted RBP16.38■□□□□ 0.21
CLN3-206ENST00000360019 LOC100506127A0A0U1RQW1 187 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 OR6C65A6NJZ3 312 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 OGG1O15527 345 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 KRT33AO76009 404 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 RPP14O95059 124 aaKnown RBP16.38■□□□□ 0.21
CLN3-206ENST00000360019 TPOP07202 933 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 TACSTD2P09758 323 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 NANOS3P60323 173 aaKnown RBP16.38■□□□□ 0.21
CLN3-206ENST00000360019 KRT77Q7Z794 578 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 OR10S1Q8NGN2 331 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 RNF133Q8WVZ7 376 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 FOXB1Q99853 325 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 MROQ9BYG7 248 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 C1orf198Q9H425 327 aa16.38■□□□□ 0.21
CLN3-206ENST00000360019 DOCK7Q96N67 2140 aa16.37■□□□□ 0.21
CLN3-206ENST00000360019 A0A1W2PPW3 197 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 270.8 ms