RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NPSR1Q6W5P4 371 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 RBMS3Q6XE24 437 aaKnown RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 TMEM64Q6YI46 380 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 ZNF620Q6ZNG0 422 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 BCDIN3DQ7Z5W3 292 aaKnown RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 LINC00346Q8IVM7 164 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SLC22A18ASQ8N1D0 253 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OR2T33Q8NG76 320 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OR1J2Q8NGS2 313 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OR13D1Q8NGV5 346 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OR56A3Q8NH54 315 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SFXN5Q8TD22 340 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 MOAP1Q96BY2 351 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 TMEM19Q96HH6 336 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 EFCAB11Q9BUY7 163 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CALML5Q9NZT1 146 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 FLVCR2Q9UPI3 526 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 MRPS2Q9Y399 296 aaKnown RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 NUP210LQ5VU65 1888 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 IDSB3KWA1 339 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 E7EQ34 232 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 GOSR2O14653 212 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 ICOSLGO75144 302 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 GLSO94925 669 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 AKR7A3O95154 331 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 KLK3P07288 261 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 IGFBP1P08833 259 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 SPARCP09486 303 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 ALPIP09923 528 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 AKAIN1P0CW23 69 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 HNRNPA2B1P22626 353 aaKnown RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 IGFALSP35858 605 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 MAP3K8P41279 467 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 UCP2P55851 309 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SIM1P81133 766 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 ST3GAL3Q11203 375 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 INPP5JQ15735 1006 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 ZNF791Q3KP31 576 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 LY6G6FQ5SQ64 297 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SAPCD1Q5SSQ6 148 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 RPL22L1Q6P5R6 122 aaKnown RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 TMEM88Q6PEY1 159 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 NHLRC1Q6VVB1 395 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 GLB1L2Q8IW92 636 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 GTPBP8Q8N3Z3 284 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 TRAM1L1Q8N609 369 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SUN3Q8TAQ9 357 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 STK35Q8TDR2 534 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 C16orf78Q8WTQ4 265 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 MR1Q95460 341 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SLC25A38Q96DW6 304 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 PIK3IP1Q96FE7 263 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 BMFQ96LC9 184 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 NOL4LQ96MY1 436 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 ZFP3Q96NJ6 502 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 MAP3K3Q99759 626 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 ZNF559Q9BR84 538 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 CHST5Q9GZS9 411 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 METTL9Q9H1A3 318 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 TLNRD1Q9H1K6 362 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SYT4Q9H2B2 425 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 C6orf106Q9H6K1 298 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 AUNIPQ9H7T9 357 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 COMMD9Q9P000 198 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 FLVCR1Q9Y5Y0 555 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 DOCK9Q9BZ29 2069 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 A0A1B0GW64 132 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 A0A1W2PP55 124 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 GXYLT2A0PJZ3 443 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 IFITM5A6NNB3 132 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 HSPB2A8KAH6 182 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 A8MXE2 369 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SEC14L6B5MCN3 397 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 PYCARD-AS1I3L0S3 204 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SULT2B1O00204 365 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 P2RX6O15547 441 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 GMFGO60234 142 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 IL2RAP01589 272 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 GIMD1P0DJR0 217 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 CD22P20273 847 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 PPP2R1BP30154 601 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SERPINF1P36955 418 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 CASRP41180 1078 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SPINT3P49223 89 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 OR10A3P58181 314 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 HSPB2Q16082 182 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SYPL1Q16563 259 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 NDUFAF6Q330K2 333 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 RNFT1Q5M7Z0 435 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SFRP4Q6FHJ7 346 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 MED27Q6P2C8 311 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 ABHD17CQ6PCB6 329 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 IL20RBQ6UXL0 311 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 TAF8Q7Z7C8 310 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 ZFP41Q8N8Y5 198 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 OR5M1Q8NGP8 315 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 LGALS14Q8TCE9 139 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 R3HDM4Q96D70 268 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 LURAP1Q96LR2 239 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 PLA2G12AQ9BZM1 189 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms