RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 ZNF74Q16587 644 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 HIST3H3Q16695 136 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 REEP3Q6NUK4 255 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 ZNF613Q6PF04 617 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 FIP1L1Q6UN15 594 aaKnown RBP13.52□□□□□ -0.25
DDX56-210ENST00000479440 RHOUQ7L0Q8 258 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 GOLGA6L1Q8N7Z2 621 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 ABHD4Q8TB40 342 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 SAMD8Q96LT4 415 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 ZNF347Q96SE7 839 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 ZNF607Q96SK3 696 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 SLC30A2Q9BRI3 323 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 SIAEQ9HAT2 523 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 MSL2Q9HCI7 577 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 TAS2R5Q9NYW4 299 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 ZNF229Q9UJW7 825 aa13.52□□□□□ -0.25
DDX56-210ENST00000479440 IGHV2-70DA0A0C4DH43 119 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 CEACAM18A8MTB9 384 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 TPST1O60507 370 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 HIST1H2ABP04908 130 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 VIMP08670 466 aaKnown RBP13.51□□□□□ -0.25
DDX56-210ENST00000479440 RPL15P61313 204 aaKnown RBP13.51□□□□□ -0.25
DDX56-210ENST00000479440 CDK6Q00534 326 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 ZMYND11Q15326 602 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 DEFB112Q30KQ8 113 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 FBLN7Q53RD9 439 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 SPRNQ5BIV9 151 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 HHATQ5VTY9 493 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 NXNQ6DKJ4 435 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 HIST3H2AQ7L7L0 130 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 NANOGNBQ7Z5D8 188 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 C1QL4Q86Z23 238 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 TMEM86BQ8N661 226 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 HIST1H2ACQ93077 130 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 RSPO3Q9BXY4 272 aaPredicted RBP13.51□□□□□ -0.25
DDX56-210ENST00000479440 PRDM13Q9H4Q3 707 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 WDR55Q9H6Y2 383 aaPredicted RBP13.51□□□□□ -0.25
DDX56-210ENST00000479440 ELOVL3Q9HB03 270 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 NOX4Q9NPH5 578 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 C1RLQ9NZP8 487 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 ARHGAP32A7KAX9 2087 aa13.51□□□□□ -0.25
DDX56-210ENST00000479440 A0A1W2PRG6 482 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 SLC22A31A6NKX4 558 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 SURF4O15260 269 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 HDAC3O15379 428 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 ICMTO60725 284 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 FMO6PO60774 539 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 SERPINB7O75635 380 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 CH25HO95992 272 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 UMPSP11172 480 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 NR2C1P13056 603 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 RPS2P15880 293 aaKnown RBP13.5□□□□□ -0.25
DDX56-210ENST00000479440 ZNF32P17041 273 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 GSTM3P21266 225 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 POLR2JP52435 117 aaKnown RBP13.5□□□□□ -0.25
DDX56-210ENST00000479440 GNB2P62879 340 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 MRPS34P82930 218 aaKnown RBP13.5□□□□□ -0.25
DDX56-210ENST00000479440 HNRNPA0Q13151 305 aaKnown RBP13.5□□□□□ -0.25
DDX56-210ENST00000479440 CDK5R2Q13319 367 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 C10orf128Q5T292 105 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 TTC33Q6PID6 262 aaPredicted RBP13.5□□□□□ -0.25
DDX56-210ENST00000479440 ARL9Q6T311 187 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 OR10S1Q8NGN2 331 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 VANGL1Q8TAA9 524 aaPredicted RBP13.5□□□□□ -0.25
DDX56-210ENST00000479440 GTF2H4Q92759 462 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 PLEKHA8Q96JA3 519 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 SIGLEC11Q96RL6 698 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 MCHR1Q99705 422 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 PAIP1Q9H074 479 aaKnown RBP13.5□□□□□ -0.25
DDX56-210ENST00000479440 SDR39U1Q9NRG7 319 aaPredicted RBP13.5□□□□□ -0.25
DDX56-210ENST00000479440 TNFRSF19Q9NS68 423 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 STX18Q9P2W9 335 aaKnown RBP13.5□□□□□ -0.25
DDX56-210ENST00000479440 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.5□□□□□ -0.25
DDX56-210ENST00000479440 KLHL21Q9UJP4 597 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 PPP1R3CQ9UQK1 317 aa13.5□□□□□ -0.25
DDX56-210ENST00000479440 SOX21Q9Y651 276 aaPredicted RBP13.5□□□□□ -0.25
DDX56-210ENST00000479440 LOC100509620A0A075B734 347 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 GMNCA6NCL1 334 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 ERLIN1O75477 346 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 PPIBP23284 216 aaKnown RBP13.49□□□□□ -0.25
DDX56-210ENST00000479440 DAP3P51398 398 aaKnown RBP13.49□□□□□ -0.25
DDX56-210ENST00000479440 ZNF133P52736 654 aaPredicted RBP13.49□□□□□ -0.25
DDX56-210ENST00000479440 BPIFB3P59826 476 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 RELBQ01201 579 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 HLXQ14774 488 aaPredicted RBP13.49□□□□□ -0.25
DDX56-210ENST00000479440 TAF9Q16594 264 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 GPR157Q5UAW9 335 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 ASPHD2Q6ICH7 369 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 LINC00114Q6XXX2 140 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 BRD3OSQ6XYD6 125 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 ARMC8Q8IUR7 673 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 ALDH16A1Q8IZ83 802 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 NPEPL1Q8NDH3 523 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 OR2Z1Q8NG97 314 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 SEPHS2Q99611 448 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 MRPL13Q9BYD1 178 aaKnown RBP13.49□□□□□ -0.25
DDX56-210ENST00000479440 MARCH7Q9H992 704 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 SMURF2Q9HAU4 748 aa13.49□□□□□ -0.25
DDX56-210ENST00000479440 SSU72Q9NP77 194 aaKnown RBP13.49□□□□□ -0.25
DDX56-210ENST00000479440 MAN2C1Q9NTJ4 1040 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms