RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 OVOL3O00110 214 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 BHLHE40O14503 412 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 E2F6O75461 281 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 PPP1R3DO95685 299 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 SNAP29O95721 258 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 RENP00797 406 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 GASTP01350 101 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 SERPINA5P05154 406 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 CELA3BP08861 270 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 MMP7P09237 267 aaPredicted RBP10.29□□□□□ -0.76
VPS52-213ENST00000461743 NOS3P29474 1203 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 TTKP33981 857 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 GIPRP48546 466 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 ARHGDIAP52565 204 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 RPS23P62266 143 aaKnown RBP10.29□□□□□ -0.76
VPS52-213ENST00000461743 PLP2Q04941 152 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 ETFDHQ16134 617 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 PGGHGQ32M88 737 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 SHEQ5VZ18 495 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 PRSS57Q6UWY2 283 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 MUC15Q8N387 334 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 OR1J2Q8NGS2 313 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 NSMAFQ92636 917 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 NEUROG1Q92886 237 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 SYT4Q9H2B2 425 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 CCNB1IP1Q9NPC3 277 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 POLE4Q9NR33 117 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 CBLN4Q9NTU7 201 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 TBC1D23Q9NUY8 699 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 IL20RAQ9UHF4 553 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 MOKQ9UQ07 419 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 LAMP3Q9UQV4 416 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 LRCH1Q9Y2L9 728 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 SPEF1Q9Y4P9 236 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 ATP23Q9Y6H3 246 aa10.29□□□□□ -0.76
VPS52-213ENST00000461743 IQCMA0A1B0GVH7 501 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 A0A1W2PPL8 197 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 VSTM5A8MXK1 200 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 H7C1C5 153 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 SOCS2O14508 198 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 KHDRBS3O75525 346 aaKnown RBP10.28□□□□□ -0.76
VPS52-213ENST00000461743 SOD3P08294 240 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 BMP4P12644 408 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 ANXA8P13928 327 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 CTLA4P16410 223 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 LAP3P28838 519 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 CALCRP30988 508 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 APOBEC3AP31941 199 aaPredicted RBP10.28□□□□□ -0.76
VPS52-213ENST00000461743 PTH2RP49190 550 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 LSM6P62312 80 aaKnown RBP10.28□□□□□ -0.76
VPS52-213ENST00000461743 LCN6P62502 163 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 NKX6-1P78426 367 aaPredicted RBP10.28□□□□□ -0.76
VPS52-213ENST00000461743 ATP6AP1Q15904 470 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 C11orf71Q6IPW1 123 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 SHQ1Q6PI26 577 aaKnown RBP10.28□□□□□ -0.76
VPS52-213ENST00000461743 PTCHD4Q6ZW05 846 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 MYPOPQ86VE0 399 aaPredicted RBP10.28□□□□□ -0.76
VPS52-213ENST00000461743 ZNF584Q8IVC4 421 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 GLB1L2Q8IW92 636 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 LNX2Q8N448 690 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 OR2T33Q8NG76 320 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 TEX47Q8TBZ9 253 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 UTP4Q969X6 686 aaKnown RBP10.28□□□□□ -0.76
VPS52-213ENST00000461743 SLCO4A1Q96BD0 722 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 TRMT61AQ96FX7 289 aaKnown RBP10.28□□□□□ -0.76
VPS52-213ENST00000461743 FAM192AQ9GZU8 254 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 EGLN3Q9H6Z9 239 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 RNF121Q9H920 327 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 SEC61A2Q9H9S3 476 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 ZNF556Q9HAH1 456 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 CA10Q9NS85 328 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 ATPIF1Q9UII2 106 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 ITGB1BP2Q9UKP3 347 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 FKBP7Q9Y680 259 aa10.28□□□□□ -0.76
VPS52-213ENST00000461743 C12orf71A8MTZ7 269 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 H7C417 338 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 IFNGP01579 166 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 COX5BP10606 129 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 ZNF35P13682 527 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 HIST1H1CP16403 213 aaKnown RBP10.27□□□□□ -0.77
VPS52-213ENST00000461743 ZNF32P17041 273 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 FASP25445 335 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 PCSK6P29122 969 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 CDAP32320 146 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 VHLP40337 213 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 CDKN2AP42771 156 aaKnown RBP10.27□□□□□ -0.77
VPS52-213ENST00000461743 FABP6P51161 128 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 GALK2Q01415 458 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 HSF2Q03933 536 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 GLO1Q04760 184 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 PIGFQ07326 219 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS52-213ENST00000461743 SCRN3Q0VDG4 424 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 PPP1R8Q12972 351 aaKnown RBP10.27□□□□□ -0.77
VPS52-213ENST00000461743 SNTB2Q13425 540 aaKnown RBP10.27□□□□□ -0.77
VPS52-213ENST00000461743 AQP6Q13520 282 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 DAG1Q14118 895 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 EFNB3Q15768 340 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 KCNMB1Q16558 191 aa10.27□□□□□ -0.77
VPS52-213ENST00000461743 SGCAQ16586 387 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms