RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 PCYT1AP49585 367 aa17.01■□□□□ 0.31
COL5A1-208ENST00000618395 TBC1D32Q96NH3 1257 aa17.01■□□□□ 0.31
COL5A1-208ENST00000618395 BIRC2Q13490 618 aa17.01■□□□□ 0.31
COL5A1-208ENST00000618395 TBC1D5Q92609 795 aa17.01■□□□□ 0.31
COL5A1-208ENST00000618395 ZSCAN16Q9H4T2 348 aaPredicted RBP17.01■□□□□ 0.31
COL5A1-208ENST00000618395 PIBF1Q8WXW3 757 aa17.01■□□□□ 0.31
COL5A1-208ENST00000618395 AMPD3Q01432 767 aa17■□□□□ 0.31
COL5A1-208ENST00000618395 RPSAP08865 295 aaKnown RBP17■□□□□ 0.31
COL5A1-208ENST00000618395 DUSP27Q5VZP5 1158 aa17■□□□□ 0.31
COL5A1-208ENST00000618395 GSTA5Q7RTV2 222 aa17■□□□□ 0.31
COL5A1-208ENST00000618395 CCDC102BQ68D86 513 aa16.99■□□□□ 0.31
COL5A1-208ENST00000618395 TACC3Q9Y6A5 838 aa16.99■□□□□ 0.31
COL5A1-208ENST00000618395 SCINQ9Y6U3 715 aa16.99■□□□□ 0.31
COL5A1-208ENST00000618395 LZTFL1Q9NQ48 299 aa16.99■□□□□ 0.31
COL5A1-208ENST00000618395 PDCD2Q16342 344 aaPredicted RBP16.99■□□□□ 0.31
COL5A1-208ENST00000618395 CROCCP2Q86T23 111 aa16.99■□□□□ 0.31
COL5A1-208ENST00000618395 CCDC26Q8TAB7 109 aa16.99■□□□□ 0.31
COL5A1-208ENST00000618395 ARL1P40616 181 aaPredicted RBP16.99■□□□□ 0.31
COL5A1-208ENST00000618395 WIZO95785 1651 aa16.99■□□□□ 0.31
COL5A1-208ENST00000618395 TRAK1Q9UPV9 953 aa16.99■□□□□ 0.31
COL5A1-208ENST00000618395 IFT20Q8IY31 132 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 LIG3P49916 1009 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 CCDC25Q86WR0 208 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 TEX2Q8IWB9 1127 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 PLCB1Q9NQ66 1216 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 SLMAPQ14BN4 828 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 TSC22D3Q99576 134 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 YY1AP1Q9H869 796 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 RRP15Q9Y3B9 282 aaKnown RBP16.98■□□□□ 0.31
COL5A1-208ENST00000618395 FERMT2Q96AC1 680 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 JPH2Q9BR39 696 aaPredicted RBP16.98■□□□□ 0.31
COL5A1-208ENST00000618395 ISM2Q6H9L7 571 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 CREB3O43889 395 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 TXNDC16Q9P2K2 825 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 GUCA1BQ9UMX6 200 aa16.98■□□□□ 0.31
COL5A1-208ENST00000618395 RMND1Q9NWS8 449 aa16.97■□□□□ 0.31
COL5A1-208ENST00000618395 NDC80O14777 642 aa16.97■□□□□ 0.31
COL5A1-208ENST00000618395 GJB2P29033 226 aa16.97■□□□□ 0.31
COL5A1-208ENST00000618395 HNRNPMP52272 730 aaKnown RBP eCLIP16.97■□□□□ 0.31
COL5A1-208ENST00000618395 ZFXP17010 805 aaPredicted RBP16.97■□□□□ 0.31
COL5A1-208ENST00000618395 HSPA1LP34931 641 aa16.97■□□□□ 0.31
COL5A1-208ENST00000618395 TYRO3Q06418 890 aa16.97■□□□□ 0.31
COL5A1-208ENST00000618395 MIA2Q96PC5 1412 aa16.97■□□□□ 0.31
COL5A1-208ENST00000618395 SH3GL3Q99963 347 aa16.97■□□□□ 0.31
COL5A1-208ENST00000618395 FCHSD2O94868 740 aa16.97■□□□□ 0.31
COL5A1-208ENST00000618395 UTP11Q9Y3A2 253 aaKnown RBP16.97■□□□□ 0.31
COL5A1-208ENST00000618395 CLTAP09496 248 aa16.96■□□□□ 0.31
COL5A1-208ENST00000618395 GPR161Q8N6U8 529 aaKnown RBP16.96■□□□□ 0.31
COL5A1-208ENST00000618395 IRAK4Q9NWZ3 460 aa16.96■□□□□ 0.31
COL5A1-208ENST00000618395 TAF7Q15545 349 aaPredicted RBP16.96■□□□□ 0.31
COL5A1-208ENST00000618395 DACT3Q96B18 629 aaPredicted RBP16.96■□□□□ 0.31
COL5A1-208ENST00000618395 NUB1Q9Y5A7 615 aa16.96■□□□□ 0.31
COL5A1-208ENST00000618395 PPP1R7Q15435 360 aa16.96■□□□□ 0.31
COL5A1-208ENST00000618395 PPP1R21Q6ZMI0 780 aa16.96■□□□□ 0.31
COL5A1-208ENST00000618395 WDHD1O75717 1129 aaPredicted RBP16.96■□□□□ 0.31
COL5A1-208ENST00000618395 PSMD6Q15008 389 aa16.96■□□□□ 0.31
COL5A1-208ENST00000618395 AOPEPQ8N6M6 819 aa16.96■□□□□ 0.31
COL5A1-208ENST00000618395 HAUS1Q96CS2 278 aa16.96■□□□□ 0.31
COL5A1-208ENST00000618395 UIMC1Q96RL1 719 aa16.96■□□□□ 0.31
COL5A1-208ENST00000618395 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.96■□□□□ 0.3
COL5A1-208ENST00000618395 MX2P20592 715 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 SYKP43405 635 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 ICE2Q659A1 982 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 BCL2L12Q9HB09 334 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 GFAPP14136 432 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 SPAG1Q07617 926 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 SAAL1Q96ER3 474 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 UBA5Q9GZZ9 404 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 TMEM266Q2M3C6 531 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 CENPKQ9BS16 269 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 SCOCQ9UIL1 159 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 MAN1A2O60476 641 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 TRIM6Q9C030 488 aaPredicted RBP16.95■□□□□ 0.3
COL5A1-208ENST00000618395 ZNF76P36508 570 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 CCDC14Q49A88 953 aa16.95■□□□□ 0.3
COL5A1-208ENST00000618395 KARSQ15046 597 aaKnown RBP16.95■□□□□ 0.3
COL5A1-208ENST00000618395 TFIP11Q9UBB9 837 aaKnown RBP16.95■□□□□ 0.3
COL5A1-208ENST00000618395 USP48Q86UV5 1035 aa16.94■□□□□ 0.3
COL5A1-208ENST00000618395 BICD1Q96G01 975 aa16.94■□□□□ 0.3
COL5A1-208ENST00000618395 ZSCAN22P10073 491 aaPredicted RBP16.94■□□□□ 0.3
COL5A1-208ENST00000618395 TCP11L2Q8N4U5 519 aa16.94■□□□□ 0.3
COL5A1-208ENST00000618395 STRN4Q9NRL3 753 aa16.94■□□□□ 0.3
COL5A1-208ENST00000618395 INPP1P49441 399 aa16.94■□□□□ 0.3
COL5A1-208ENST00000618395 CALCOCO2Q13137 446 aa16.94■□□□□ 0.3
COL5A1-208ENST00000618395 TWISTNBQ3B726 338 aaPredicted RBP16.94■□□□□ 0.3
COL5A1-208ENST00000618395 NEK11Q8NG66 645 aa16.94■□□□□ 0.3
COL5A1-208ENST00000618395 GNL3LQ9NVN8 582 aaKnown RBP16.94■□□□□ 0.3
COL5A1-208ENST00000618395 TRIM47Q96LD4 638 aa16.94■□□□□ 0.3
COL5A1-208ENST00000618395 GON4LQ3T8J9 2241 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 HMOX1P09601 288 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 AACSQ86V21 672 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 SEC63Q9UGP8 760 aaKnown RBP16.93■□□□□ 0.3
COL5A1-208ENST00000618395 E2F4Q16254 413 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 RABEP2Q9H5N1 569 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 PPFIA4O75335 1185 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 CLUL1Q15846 466 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 TCERG1LQ5VWI1 586 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 DDX21Q9NR30 783 aaKnown RBP eCLIP16.93■□□□□ 0.3
COL5A1-208ENST00000618395 ACTN4O43707 911 aaKnown RBP16.93■□□□□ 0.3
COL5A1-208ENST00000618395 SKOR1P84550 965 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms