RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 JPH2Q9BR39 696 aaPredicted RBP12.66□□□□□ -0.38
CLK3-226ENST00000569406 SLC4A2P04920 1241 aa12.65□□□□□ -0.38
CLK3-226ENST00000569406 IRX1P78414 480 aaPredicted RBP12.65□□□□□ -0.38
CLK3-226ENST00000569406 FOXR1Q6PIV2 292 aa12.65□□□□□ -0.38
CLK3-226ENST00000569406 FAXDC2Q96IV6 333 aa12.65□□□□□ -0.38
CLK3-226ENST00000569406 STRCP1A6NGW2 1772 aa12.65□□□□□ -0.38
CLK3-226ENST00000569406 F6X3S4 739 aa12.65□□□□□ -0.38
CLK3-226ENST00000569406 PDE6BP35913 854 aa12.65□□□□□ -0.38
CLK3-226ENST00000569406 KCNA4P22459 653 aa12.65□□□□□ -0.38
CLK3-226ENST00000569406 SALL3Q9BXA9 1300 aa12.64□□□□□ -0.39
CLK3-226ENST00000569406 ECEL1O95672 775 aa12.64□□□□□ -0.39
CLK3-226ENST00000569406 C1QTNF12Q5T7M4 302 aa12.64□□□□□ -0.39
CLK3-226ENST00000569406 SRRTQ9BXP5 876 aaKnown RBP12.64□□□□□ -0.39
CLK3-226ENST00000569406 SLU7O95391 586 aaKnown RBP12.64□□□□□ -0.39
CLK3-226ENST00000569406 AMPHP49418 695 aa12.64□□□□□ -0.39
CLK3-226ENST00000569406 CCDC186Q7Z3E2 898 aa12.64□□□□□ -0.39
CLK3-226ENST00000569406 TMTC2Q8N394 836 aa12.64□□□□□ -0.39
CLK3-226ENST00000569406 ABTB2Q8N961 1025 aa12.64□□□□□ -0.39
CLK3-226ENST00000569406 PXDNQ92626 1479 aa12.63□□□□□ -0.39
CLK3-226ENST00000569406 AP1G2O75843 785 aa12.63□□□□□ -0.39
CLK3-226ENST00000569406 SLFNL1Q499Z3 407 aa12.63□□□□□ -0.39
CLK3-226ENST00000569406 USHBP1Q8N6Y0 703 aa12.63□□□□□ -0.39
CLK3-226ENST00000569406 ALS2Q96Q42 1657 aa12.63□□□□□ -0.39
CLK3-226ENST00000569406 MAP3K5Q99683 1374 aa12.63□□□□□ -0.39
CLK3-226ENST00000569406 DHX8Q14562 1220 aaKnown RBP12.63□□□□□ -0.39
CLK3-226ENST00000569406 FMNL3Q8IVF7 1028 aa12.63□□□□□ -0.39
CLK3-226ENST00000569406 ERCC4Q92889 916 aaPredicted RBP12.63□□□□□ -0.39
CLK3-226ENST00000569406 GDPD2Q9HCC8 539 aa12.63□□□□□ -0.39
CLK3-226ENST00000569406 MFSD4BQ5TF39 518 aa12.63□□□□□ -0.39
CLK3-226ENST00000569406 ARGLU1Q9NWB6 273 aaPredicted RBP12.63□□□□□ -0.39
CLK3-226ENST00000569406 TSPYL4Q9UJ04 414 aa12.63□□□□□ -0.39
CLK3-226ENST00000569406 PHF8Q9UPP1 1060 aa12.63□□□□□ -0.39
CLK3-226ENST00000569406 USP8P40818 1118 aa12.62□□□□□ -0.39
CLK3-226ENST00000569406 ARHGAP29Q52LW3 1261 aa12.62□□□□□ -0.39
CLK3-226ENST00000569406 N4BP2L2Q92802 583 aaPredicted RBP12.62□□□□□ -0.39
CLK3-226ENST00000569406 SUDS3Q9H7L9 328 aaPredicted RBP12.62□□□□□ -0.39
CLK3-226ENST00000569406 SEC31AO94979 1220 aaKnown RBP12.62□□□□□ -0.39
CLK3-226ENST00000569406 CORO7P57737 925 aa12.62□□□□□ -0.39
CLK3-226ENST00000569406 CC2D2BQ6DHV5 1058 aa12.62□□□□□ -0.39
CLK3-226ENST00000569406 ZGPATQ8N5A5 531 aaKnown RBP12.62□□□□□ -0.39
CLK3-226ENST00000569406 KDM4CQ9H3R0 1056 aa12.62□□□□□ -0.39
CLK3-226ENST00000569406 ADAM21Q9UKJ8 722 aa12.62□□□□□ -0.39
CLK3-226ENST00000569406 GNAT3A8MTJ3 354 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 SMC1AQ14683 1233 aaKnown RBP12.61□□□□□ -0.39
CLK3-226ENST00000569406 ANKRD23Q86SG2 305 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 TRIM6Q9C030 488 aaPredicted RBP12.61□□□□□ -0.39
CLK3-226ENST00000569406 VEZTQ9HBM0 779 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.61□□□□□ -0.39
CLK3-226ENST00000569406 MST1RQ04912 1400 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 PTPN14Q15678 1187 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 PLEKHO1Q53GL0 409 aaPredicted RBP12.61□□□□□ -0.39
CLK3-226ENST00000569406 IP6K1Q92551 441 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 PLEKHA4Q9H4M7 779 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 PICK1Q9NRD5 415 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 KIF2AO00139 706 aaPredicted RBP12.61□□□□□ -0.39
CLK3-226ENST00000569406 SMARCA5O60264 1052 aaPredicted RBP12.61□□□□□ -0.39
CLK3-226ENST00000569406 ELF1P32519 619 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 TADA2BQ86TJ2 420 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 TRIM74Q86UV6 250 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 TRIM73Q86UV7 250 aa12.61□□□□□ -0.39
CLK3-226ENST00000569406 ZSCAN16Q9H4T2 348 aaPredicted RBP12.61□□□□□ -0.39
CLK3-226ENST00000569406 GNL3LQ9NVN8 582 aaKnown RBP12.61□□□□□ -0.39
CLK3-226ENST00000569406 FRMD3A2A2Y4 597 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 KINO60870 393 aaKnown RBP12.6□□□□□ -0.39
CLK3-226ENST00000569406 TTC22Q5TAA0 569 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 RNF20Q5VTR2 975 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 REXO1L1PQ8IX06 675 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 CTCFLQ8NI51 663 aaPredicted RBP12.6□□□□□ -0.39
CLK3-226ENST00000569406 MYBL2P10244 700 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 GORABQ5T7V8 394 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 CPLX2Q6PUV4 134 aaKnown RBP12.6□□□□□ -0.39
CLK3-226ENST00000569406 RINLQ6ZS11 566 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 RPAP2Q8IXW5 612 aaPredicted RBP12.6□□□□□ -0.39
CLK3-226ENST00000569406 KLHL23Q8NBE8 558 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 ORAI2Q96SN7 254 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 G3BP2Q9UN86 482 aaKnown RBP12.6□□□□□ -0.39
CLK3-226ENST00000569406 NF2P35240 595 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 ADCY2Q08462 1091 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 NFXL1Q6ZNB6 911 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 ANKLE2Q86XL3 938 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 LGR6Q9HBX8 967 aa12.6□□□□□ -0.39
CLK3-226ENST00000569406 COL18A1P39060 1754 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 PXDNLA1KZ92 1463 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 COQ9O75208 318 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 H2AFXP16104 143 aaPredicted RBP12.59□□□□□ -0.39
CLK3-226ENST00000569406 CASTP20810 708 aaKnown RBP12.59□□□□□ -0.39
CLK3-226ENST00000569406 WWC2Q6AWC2 1192 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 GOPCQ9HD26 462 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 TRMT1Q9NXH9 659 aaKnown RBP12.59□□□□□ -0.39
CLK3-226ENST00000569406 NPHP4O75161 1426 aaPredicted RBP12.59□□□□□ -0.39
CLK3-226ENST00000569406 CCNHP51946 323 aaPredicted RBP12.59□□□□□ -0.39
CLK3-226ENST00000569406 NAP1L1P55209 391 aaKnown RBP12.59□□□□□ -0.39
CLK3-226ENST00000569406 TBC1D8BQ0IIM8 1120 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 EFCAB13Q8IY85 973 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 SPATS2LQ9NUQ6 558 aaKnown RBP12.59□□□□□ -0.39
CLK3-226ENST00000569406 AP5Z1O43299 807 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 ERLIN2O94905 339 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 CYP2E1P05181 493 aaPredicted RBP12.59□□□□□ -0.39
CLK3-226ENST00000569406 HNRNPH1P31943 449 aaKnown RBP12.59□□□□□ -0.39
CLK3-226ENST00000569406 RDXP35241 583 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms