RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 KRT26Q7Z3Y9 468 aa22.88■■□□□ 1.25
CLK3-221ENST00000568139 ADAMTS8Q9UP79 889 aa22.88■■□□□ 1.25
CLK3-221ENST00000568139 SCN9AQ15858 1988 aa22.88■■□□□ 1.25
CLK3-221ENST00000568139 ZBTB38Q8NAP3 1195 aaPredicted RBP22.87■■□□□ 1.25
CLK3-221ENST00000568139 MCOLN1Q9GZU1 580 aa22.87■■□□□ 1.25
CLK3-221ENST00000568139 PODXL2Q9NZ53 605 aa22.87■■□□□ 1.25
CLK3-221ENST00000568139 VIL1P09327 827 aaKnown RBP22.86■■□□□ 1.25
CLK3-221ENST00000568139 DCPSQ96C86 337 aaKnown RBP22.86■■□□□ 1.25
CLK3-221ENST00000568139 GBA2Q9HCG7 927 aaPredicted RBP22.86■■□□□ 1.25
CLK3-221ENST00000568139 MBIPQ9NS73 344 aa22.86■■□□□ 1.25
CLK3-221ENST00000568139 FAM155AB1AL88 458 aaPredicted RBP22.85■■□□□ 1.25
CLK3-221ENST00000568139 ZNF853P0CG23 659 aa22.85■■□□□ 1.25
CLK3-221ENST00000568139 MLLT1Q03111 559 aaPredicted RBP22.85■■□□□ 1.25
CLK3-221ENST00000568139 DDX10Q13206 875 aaKnown RBP22.85■■□□□ 1.25
CLK3-221ENST00000568139 RBM26Q5T8P6 1007 aaKnown RBP22.85■■□□□ 1.25
CLK3-221ENST00000568139 RGMBQ6NW40 437 aa22.85■■□□□ 1.25
CLK3-221ENST00000568139 RIC3Q7Z5B4 369 aa22.85■■□□□ 1.25
CLK3-221ENST00000568139 ZC3H12CQ9C0D7 883 aaKnown RBP22.85■■□□□ 1.25
CLK3-221ENST00000568139 C2orf69Q8N8R5 385 aa22.84■■□□□ 1.25
CLK3-221ENST00000568139 SEC31BQ9NQW1 1179 aa22.84■■□□□ 1.25
CLK3-221ENST00000568139 ADM5C9JUS6 153 aa22.83■■□□□ 1.25
CLK3-221ENST00000568139 HSP90B1P14625 803 aaKnown RBP22.83■■□□□ 1.25
CLK3-221ENST00000568139 GOLGA2Q08379 1002 aa22.83■■□□□ 1.25
CLK3-221ENST00000568139 KIF4BQ2VIQ3 1234 aa22.83■■□□□ 1.25
CLK3-221ENST00000568139 CCDC102AQ96A19 550 aa22.83■■□□□ 1.25
CLK3-221ENST00000568139 PHAXQ9H814 394 aaKnown RBP22.83■■□□□ 1.25
CLK3-221ENST00000568139 PSME4Q14997 1843 aa22.82■■□□□ 1.24
CLK3-221ENST00000568139 PCCAP05165 728 aaPredicted RBP22.81■■□□□ 1.24
CLK3-221ENST00000568139 DGKZQ13574 1117 aa22.81■■□□□ 1.24
CLK3-221ENST00000568139 CCDC191Q8NCU4 936 aa22.81■■□□□ 1.24
CLK3-221ENST00000568139 GGA1Q9UJY5 639 aa22.81■■□□□ 1.24
CLK3-221ENST00000568139 ZNF609O15014 1411 aa22.81■■□□□ 1.24
CLK3-221ENST00000568139 UFL1O94874 794 aa22.8■■□□□ 1.24
CLK3-221ENST00000568139 MYD88Q99836 296 aa22.8■■□□□ 1.24
CLK3-221ENST00000568139 IFT57Q9NWB7 429 aa22.8■■□□□ 1.24
CLK3-221ENST00000568139 SAGE1Q9NXZ1 904 aa22.8■■□□□ 1.24
CLK3-221ENST00000568139 ANKIB1Q9P2G1 1089 aa22.8■■□□□ 1.24
CLK3-221ENST00000568139 AKAP11Q9UKA4 1901 aa22.8■■□□□ 1.24
CLK3-221ENST00000568139 G3V3G9 751 aa22.79■■□□□ 1.24
CLK3-221ENST00000568139 PDE8AO60658 829 aa22.79■■□□□ 1.24
CLK3-221ENST00000568139 ZNF157P51786 506 aaPredicted RBP22.79■■□□□ 1.24
CLK3-221ENST00000568139 ZNF280AP59817 542 aaPredicted RBP22.79■■□□□ 1.24
CLK3-221ENST00000568139 KIF23Q02241 960 aaPredicted RBP22.79■■□□□ 1.24
CLK3-221ENST00000568139 CCDC152Q4G0S7 254 aa22.79■■□□□ 1.24
CLK3-221ENST00000568139 DCAF8Q5TAQ9 597 aa22.79■■□□□ 1.24
CLK3-221ENST00000568139 SULF1Q8IWU6 871 aa22.79■■□□□ 1.24
CLK3-221ENST00000568139 AGBL3Q8NEM8 1001 aa22.79■■□□□ 1.24
CLK3-221ENST00000568139 GGA3Q9NZ52 723 aa22.79■■□□□ 1.24
CLK3-221ENST00000568139 RSBN1LQ6PCB5 846 aaPredicted RBP22.78■■□□□ 1.24
CLK3-221ENST00000568139 ASTN2O75129 1339 aaPredicted RBP22.78■■□□□ 1.24
CLK3-221ENST00000568139 ELL2O00472 640 aaPredicted RBP22.77■■□□□ 1.24
CLK3-221ENST00000568139 SLC34A2O95436 690 aa22.77■■□□□ 1.24
CLK3-221ENST00000568139 GNAI1P63096 354 aa22.77■■□□□ 1.24
CLK3-221ENST00000568139 CWC25Q9NXE8 425 aaPredicted RBP22.77■■□□□ 1.24
CLK3-221ENST00000568139 SLC10A3P09131 477 aa22.76■■□□□ 1.23
CLK3-221ENST00000568139 CDCA5Q96FF9 252 aa22.76■■□□□ 1.23
CLK3-221ENST00000568139 GMLQ99445 158 aa22.76■■□□□ 1.23
CLK3-221ENST00000568139 METTL22Q9BUU2 404 aaPredicted RBP22.76■■□□□ 1.23
CLK3-221ENST00000568139 APAF1O14727 1248 aa22.75■■□□□ 1.23
CLK3-221ENST00000568139 CALD1Q05682 793 aaKnown RBP22.75■■□□□ 1.23
CLK3-221ENST00000568139 SCARF1Q14162 830 aa22.75■■□□□ 1.23
CLK3-221ENST00000568139 ANKRD18AQ8IVF6 992 aa22.75■■□□□ 1.23
CLK3-221ENST00000568139 JARID2Q92833 1246 aaPredicted RBP22.75■■□□□ 1.23
CLK3-221ENST00000568139 RNF186Q9NXI6 227 aa22.75■■□□□ 1.23
CLK3-221ENST00000568139 XDHP47989 1333 aa22.75■■□□□ 1.23
CLK3-221ENST00000568139 ATP2B4P23634 1241 aa22.74■■□□□ 1.23
CLK3-221ENST00000568139 ANGEL2Q5VTE6 544 aaKnown RBP22.74■■□□□ 1.23
CLK3-221ENST00000568139 C8orf58Q8NAV2 365 aa22.74■■□□□ 1.23
CLK3-221ENST00000568139 CCDC85AQ96PX6 553 aaPredicted RBP22.74■■□□□ 1.23
CLK3-221ENST00000568139 CSRNP1Q96S65 589 aa22.74■■□□□ 1.23
CLK3-221ENST00000568139 TRPA1O75762 1119 aa22.73■■□□□ 1.23
CLK3-221ENST00000568139 PODNQ7Z5L7 613 aa22.73■■□□□ 1.23
CLK3-221ENST00000568139 DDX58O95786 925 aaKnown RBP22.72■■□□□ 1.23
CLK3-221ENST00000568139 USP17L8P0C7I0 530 aa22.72■■□□□ 1.23
CLK3-221ENST00000568139 CCDC30Q5VVM6 783 aa22.72■■□□□ 1.23
CLK3-221ENST00000568139 CHMP4AQ9BY43 222 aa22.72■■□□□ 1.23
CLK3-221ENST00000568139 PRKRIP1Q9H875 184 aaPredicted RBP22.72■■□□□ 1.23
CLK3-221ENST00000568139 MYOZ2Q9NPC6 264 aa22.72■■□□□ 1.23
CLK3-221ENST00000568139 PITPNM2Q9BZ72 1349 aa22.72■■□□□ 1.23
CLK3-221ENST00000568139 MYH3P11055 1940 aa22.71■■□□□ 1.23
CLK3-221ENST00000568139 USP17L3A6NCW0 530 aa22.71■■□□□ 1.23
CLK3-221ENST00000568139 USP17L4A6NCW7 530 aa22.71■■□□□ 1.23
CLK3-221ENST00000568139 FKBP1BP68106 108 aa22.71■■□□□ 1.23
CLK3-221ENST00000568139 USP17L1Q7RTZ2 530 aa22.71■■□□□ 1.23
CLK3-221ENST00000568139 REM2Q8IYK8 340 aaPredicted RBP22.71■■□□□ 1.23
CLK3-221ENST00000568139 RASAL3Q86YV0 1011 aa22.7■■□□□ 1.22
CLK3-221ENST00000568139 CDC5LQ99459 802 aaKnown RBP22.7■■□□□ 1.22
CLK3-221ENST00000568139 MAP3K2Q9Y2U5 619 aa22.7■■□□□ 1.22
CLK3-221ENST00000568139 PAPPA2Q9BXP8 1791 aa22.7■■□□□ 1.22
CLK3-221ENST00000568139 CTSWP56202 376 aa22.69■■□□□ 1.22
CLK3-221ENST00000568139 BSDC1Q9NW68 430 aaPredicted RBP22.69■■□□□ 1.22
CLK3-221ENST00000568139 WTIPA6NIX2 430 aaPredicted RBP22.68■■□□□ 1.22
CLK3-221ENST00000568139 IGKV5-2P06315 115 aa22.68■■□□□ 1.22
CLK3-221ENST00000568139 KSR2Q6VAB6 950 aa22.68■■□□□ 1.22
CLK3-221ENST00000568139 TTLL11Q8NHH1 800 aa22.68■■□□□ 1.22
CLK3-221ENST00000568139 MINPP1Q9UNW1 487 aa22.68■■□□□ 1.22
CLK3-221ENST00000568139 ZNF646O15015 1829 aaPredicted RBP22.68■■□□□ 1.22
CLK3-221ENST00000568139 MED23Q9ULK4 1368 aa22.67■■□□□ 1.22
CLK3-221ENST00000568139 SPEF2Q9C093 1822 aa22.67■■□□□ 1.22
CLK3-221ENST00000568139 TSPYL6Q8N831 410 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms