RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 ECE2O60344 883 aa16.96■□□□□ 0.31
TPM1-220ENST00000559556 AOC2O75106 756 aa16.96■□□□□ 0.31
TPM1-220ENST00000559556 RPS12P25398 132 aaKnown RBP16.96■□□□□ 0.31
TPM1-220ENST00000559556 RPS8P62241 208 aaKnown RBP16.96■□□□□ 0.31
TPM1-220ENST00000559556 RIC3Q7Z5B4 369 aa16.96■□□□□ 0.31
TPM1-220ENST00000559556 CCDC191Q8NCU4 936 aa16.96■□□□□ 0.31
TPM1-220ENST00000559556 EYA3Q99504 573 aa16.96■□□□□ 0.31
TPM1-220ENST00000559556 PHAXQ9H814 394 aaKnown RBP16.96■□□□□ 0.31
TPM1-220ENST00000559556 PODXL2Q9NZ53 605 aa16.96■□□□□ 0.31
TPM1-220ENST00000559556 HSP90B1P14625 803 aaKnown RBP16.95■□□□□ 0.3
TPM1-220ENST00000559556 TBC1D16Q8TBP0 767 aa16.95■□□□□ 0.3
TPM1-220ENST00000559556 RIMBP2O15034 1052 aa16.94■□□□□ 0.3
TPM1-220ENST00000559556 PCCAP05165 728 aaPredicted RBP16.94■□□□□ 0.3
TPM1-220ENST00000559556 BRPF1P55201 1214 aaPredicted RBP16.94■□□□□ 0.3
TPM1-220ENST00000559556 SAMD7Q7Z3H4 446 aa16.94■□□□□ 0.3
TPM1-220ENST00000559556 ABHD8Q96I13 439 aa16.94■□□□□ 0.3
TPM1-220ENST00000559556 MYD88Q99836 296 aa16.94■□□□□ 0.3
TPM1-220ENST00000559556 ZNF408Q9H9D4 720 aa16.94■□□□□ 0.3
TPM1-220ENST00000559556 CA12O43570 354 aa16.93■□□□□ 0.3
TPM1-220ENST00000559556 EGFRP00533 1210 aa16.93■□□□□ 0.3
TPM1-220ENST00000559556 CCDC152Q4G0S7 254 aa16.93■□□□□ 0.3
TPM1-220ENST00000559556 TBC1D10BQ4KMP7 808 aaPredicted RBP16.93■□□□□ 0.3
TPM1-220ENST00000559556 SEC31BQ9NQW1 1179 aa16.93■□□□□ 0.3
TPM1-220ENST00000559556 KCNQ5Q9NR82 932 aa16.93■□□□□ 0.3
TPM1-220ENST00000559556 ELL2O00472 640 aaPredicted RBP16.92■□□□□ 0.3
TPM1-220ENST00000559556 PDE8AO60658 829 aa16.92■□□□□ 0.3
TPM1-220ENST00000559556 DOK7Q18PE1 504 aa16.92■□□□□ 0.3
TPM1-220ENST00000559556 USP48Q86UV5 1035 aa16.92■□□□□ 0.3
TPM1-220ENST00000559556 C8orf58Q8NAV2 365 aa16.92■□□□□ 0.3
TPM1-220ENST00000559556 CWC25Q9NXE8 425 aaPredicted RBP16.92■□□□□ 0.3
TPM1-220ENST00000559556 ARAP2Q8WZ64 1704 aa16.91■□□□□ 0.3
TPM1-220ENST00000559556 UFL1O94874 794 aa16.91■□□□□ 0.3
TPM1-220ENST00000559556 DDX58O95786 925 aaKnown RBP16.91■□□□□ 0.3
TPM1-220ENST00000559556 VIL1P09327 827 aaKnown RBP16.91■□□□□ 0.3
TPM1-220ENST00000559556 KRT26Q7Z3Y9 468 aa16.91■□□□□ 0.3
TPM1-220ENST00000559556 METTL22Q9BUU2 404 aaPredicted RBP16.91■□□□□ 0.3
TPM1-220ENST00000559556 CHMP4AQ9BY43 222 aa16.91■□□□□ 0.3
TPM1-220ENST00000559556 ZC3H12CQ9C0D7 883 aaKnown RBP16.91■□□□□ 0.3
TPM1-220ENST00000559556 HUNKP57058 714 aa16.9■□□□□ 0.3
TPM1-220ENST00000559556 NOGQ13253 232 aa16.9■□□□□ 0.3
TPM1-220ENST00000559556 CCDC30Q5VVM6 783 aa16.9■□□□□ 0.3
TPM1-220ENST00000559556 ANKIB1Q9P2G1 1089 aa16.9■□□□□ 0.3
TPM1-220ENST00000559556 TSKSQ9UJT2 592 aa16.9■□□□□ 0.3
TPM1-220ENST00000559556 GGA1Q9UJY5 639 aa16.9■□□□□ 0.3
TPM1-220ENST00000559556 XDHP47989 1333 aa16.9■□□□□ 0.3
TPM1-220ENST00000559556 MYH13Q9UKX3 1938 aa16.9■□□□□ 0.3
TPM1-220ENST00000559556 KIF4BQ2VIQ3 1234 aa16.89■□□□□ 0.29
TPM1-220ENST00000559556 DLK2Q6UY11 383 aa16.89■□□□□ 0.29
TPM1-220ENST00000559556 ADM5C9JUS6 153 aa16.88■□□□□ 0.29
TPM1-220ENST00000559556 DCPSQ96C86 337 aaKnown RBP16.88■□□□□ 0.29
TPM1-220ENST00000559556 GBA2Q9HCG7 927 aaPredicted RBP16.88■□□□□ 0.29
TPM1-220ENST00000559556 CTSWP56202 376 aa16.87■□□□□ 0.29
TPM1-220ENST00000559556 ZNF280AP59817 542 aaPredicted RBP16.87■□□□□ 0.29
TPM1-220ENST00000559556 ANKRD18AQ8IVF6 992 aa16.87■□□□□ 0.29
TPM1-220ENST00000559556 TSPYL6Q8N831 410 aa16.87■□□□□ 0.29
TPM1-220ENST00000559556 AGBL3Q8NEM8 1001 aa16.87■□□□□ 0.29
TPM1-220ENST00000559556 GGA3Q9NZ52 723 aa16.87■□□□□ 0.29
TPM1-220ENST00000559556 MAP3K2Q9Y2U5 619 aa16.87■□□□□ 0.29
TPM1-220ENST00000559556 MED23Q9ULK4 1368 aa16.87■□□□□ 0.29
TPM1-220ENST00000559556 FAM155AB1AL88 458 aaPredicted RBP16.86■□□□□ 0.29
TPM1-220ENST00000559556 G3V3G9 751 aa16.86■□□□□ 0.29
TPM1-220ENST00000559556 IGKV5-2P06315 115 aa16.86■□□□□ 0.29
TPM1-220ENST00000559556 RBM26Q5T8P6 1007 aaKnown RBP16.86■□□□□ 0.29
TPM1-220ENST00000559556 DCAF8Q5TAQ9 597 aa16.86■□□□□ 0.29
TPM1-220ENST00000559556 RGMBQ6NW40 437 aa16.86■□□□□ 0.29
TPM1-220ENST00000559556 RSBN1LQ6PCB5 846 aaPredicted RBP16.86■□□□□ 0.29
TPM1-220ENST00000559556 KSR2Q6VAB6 950 aa16.86■□□□□ 0.29
TPM1-220ENST00000559556 C2orf69Q8N8R5 385 aa16.86■□□□□ 0.29
TPM1-220ENST00000559556 JARID2Q92833 1246 aaPredicted RBP16.86■□□□□ 0.29
TPM1-220ENST00000559556 CCDC85AQ96PX6 553 aaPredicted RBP16.86■□□□□ 0.29
TPM1-220ENST00000559556 ZIC5Q96T25 663 aa16.86■□□□□ 0.29
TPM1-220ENST00000559556 GMLQ99445 158 aa16.86■□□□□ 0.29
TPM1-220ENST00000559556 OTOFQ9HC10 1997 aa16.86■□□□□ 0.29
TPM1-220ENST00000559556 PI4KAP2A4QPH2 592 aa16.85■□□□□ 0.29
TPM1-220ENST00000559556 SULF1Q8IWU6 871 aa16.85■□□□□ 0.29
TPM1-220ENST00000559556 PI4KAP1Q8N8J0 262 aa16.85■□□□□ 0.29
TPM1-220ENST00000559556 CDC5LQ99459 802 aaKnown RBP16.85■□□□□ 0.29
TPM1-220ENST00000559556 CENPFP49454 3210 aa16.85■□□□□ 0.29
TPM1-220ENST00000559556 ATP2B4P23634 1241 aa16.84■□□□□ 0.29
TPM1-220ENST00000559556 CCDC27Q2M243 656 aa16.84■□□□□ 0.29
TPM1-220ENST00000559556 TTLL11Q8NHH1 800 aa16.84■□□□□ 0.29
TPM1-220ENST00000559556 TSR2Q969E8 191 aaKnown RBP16.84■□□□□ 0.29
TPM1-220ENST00000559556 ASTN2O75129 1339 aaPredicted RBP16.84■□□□□ 0.29
TPM1-220ENST00000559556 PITPNM2Q9BZ72 1349 aa16.84■□□□□ 0.29
TPM1-220ENST00000559556 HTTP42858 3142 aa16.83■□□□□ 0.29
TPM1-220ENST00000559556 NEXNQ0ZGT2 675 aa16.83■□□□□ 0.28
TPM1-220ENST00000559556 PODNQ7Z5L7 613 aa16.83■□□□□ 0.28
TPM1-220ENST00000559556 CCDC102AQ96A19 550 aa16.83■□□□□ 0.28
TPM1-220ENST00000559556 CDCA5Q96FF9 252 aa16.83■□□□□ 0.28
TPM1-220ENST00000559556 STK31Q9BXU1 1019 aa16.83■□□□□ 0.28
TPM1-220ENST00000559556 BSDC1Q9NW68 430 aaPredicted RBP16.83■□□□□ 0.28
TPM1-220ENST00000559556 SAGE1Q9NXZ1 904 aa16.83■□□□□ 0.28
TPM1-220ENST00000559556 USP17L3A6NCW0 530 aa16.82■□□□□ 0.28
TPM1-220ENST00000559556 USP17L4A6NCW7 530 aa16.82■□□□□ 0.28
TPM1-220ENST00000559556 NEURL1BA8MQ27 555 aa16.82■□□□□ 0.28
TPM1-220ENST00000559556 SLC10A3P09131 477 aa16.82■□□□□ 0.28
TPM1-220ENST00000559556 USP17L1Q7RTZ2 530 aa16.82■□□□□ 0.28
TPM1-220ENST00000559556 MCOLN1Q9GZU1 580 aa16.82■□□□□ 0.28
TPM1-220ENST00000559556 GREM2Q9H772 168 aa16.82■□□□□ 0.28
TPM1-220ENST00000559556 MYOZ2Q9NPC6 264 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms