RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 COL4A5P29400 1685 aa21.89■■□□□ 1.1
SHMT2-225ENST00000556798 ZBTB7BO15156 539 aaPredicted RBP21.89■■□□□ 1.09
SHMT2-225ENST00000556798 GNAI2P04899 355 aa21.89■■□□□ 1.09
SHMT2-225ENST00000556798 HDAC5Q9UQL6 1122 aa21.89■■□□□ 1.09
SHMT2-225ENST00000556798 PDE3AQ14432 1141 aa21.88■■□□□ 1.09
SHMT2-225ENST00000556798 GRIPAP1Q4V328 841 aa21.88■■□□□ 1.09
SHMT2-225ENST00000556798 KLHDC4Q8TBB5 520 aa21.88■■□□□ 1.09
SHMT2-225ENST00000556798 MINPP1Q9UNW1 487 aa21.88■■□□□ 1.09
SHMT2-225ENST00000556798 IARSP41252 1262 aaKnown RBP21.87■■□□□ 1.09
SHMT2-225ENST00000556798 GPR101Q96P66 508 aaPredicted RBP21.87■■□□□ 1.09
SHMT2-225ENST00000556798 ANKIB1Q9P2G1 1089 aa21.87■■□□□ 1.09
SHMT2-225ENST00000556798 YY1P25490 414 aa21.86■■□□□ 1.09
SHMT2-225ENST00000556798 RFX5P48382 616 aaPredicted RBP21.86■■□□□ 1.09
SHMT2-225ENST00000556798 RTFDC1Q9BY42 306 aaPredicted RBP21.86■■□□□ 1.09
SHMT2-225ENST00000556798 PUS3Q9BZE2 481 aaKnown RBP21.86■■□□□ 1.09
SHMT2-225ENST00000556798 DDX19BQ9UMR2 479 aa21.86■■□□□ 1.09
SHMT2-225ENST00000556798 XDHP47989 1333 aa21.85■■□□□ 1.09
SHMT2-225ENST00000556798 C6orf229H3BNL8 230 aa21.85■■□□□ 1.09
SHMT2-225ENST00000556798 UFL1O94874 794 aa21.85■■□□□ 1.09
SHMT2-225ENST00000556798 LDHAL6AQ6ZMR3 332 aa21.85■■□□□ 1.09
SHMT2-225ENST00000556798 CNNM1Q9NRU3 951 aa21.85■■□□□ 1.09
SHMT2-225ENST00000556798 POLLQ9UGP5 575 aa21.85■■□□□ 1.09
SHMT2-225ENST00000556798 PPIP5K2O43314 1243 aa21.84■■□□□ 1.09
SHMT2-225ENST00000556798 CHRNDQ07001 517 aa21.84■■□□□ 1.09
SHMT2-225ENST00000556798 AOC3Q16853 763 aa21.84■■□□□ 1.09
SHMT2-225ENST00000556798 SUPT20HQ8NEM7 779 aa21.84■■□□□ 1.09
SHMT2-225ENST00000556798 TBC1D16Q8TBP0 767 aa21.84■■□□□ 1.09
SHMT2-225ENST00000556798 PODXL2Q9NZ53 605 aa21.84■■□□□ 1.09
SHMT2-225ENST00000556798 WTIPA6NIX2 430 aaPredicted RBP21.83■■□□□ 1.09
SHMT2-225ENST00000556798 SRGAP3O43295 1099 aa21.83■■□□□ 1.09
SHMT2-225ENST00000556798 LRRC24Q50LG9 513 aa21.83■■□□□ 1.09
SHMT2-225ENST00000556798 LARGE2Q8N3Y3 721 aa21.83■■□□□ 1.09
SHMT2-225ENST00000556798 HELBQ8NG08 1087 aaPredicted RBP21.83■■□□□ 1.09
SHMT2-225ENST00000556798 GGA1Q9UJY5 639 aa21.83■■□□□ 1.09
SHMT2-225ENST00000556798 TAF5LO75529 589 aa21.82■■□□□ 1.08
SHMT2-225ENST00000556798 PTPN12Q05209 780 aaKnown RBP21.82■■□□□ 1.08
SHMT2-225ENST00000556798 MTX1Q13505 466 aa21.82■■□□□ 1.08
SHMT2-225ENST00000556798 PA2G4Q9UQ80 394 aaKnown RBP21.82■■□□□ 1.08
SHMT2-225ENST00000556798 PNMA6EA0A0J9YXQ4 647 aa21.81■■□□□ 1.08
SHMT2-225ENST00000556798 RIMBP2O15034 1052 aa21.81■■□□□ 1.08
SHMT2-225ENST00000556798 ANKRD2Q9GZV1 360 aa21.81■■□□□ 1.08
SHMT2-225ENST00000556798 SIL1Q9H173 461 aa21.81■■□□□ 1.08
SHMT2-225ENST00000556798 ATP2B4P23634 1241 aa21.8■■□□□ 1.08
SHMT2-225ENST00000556798 KIAA2012Q0VF49 1180 aa21.8■■□□□ 1.08
SHMT2-225ENST00000556798 WASHC4Q2M389 1173 aa21.8■■□□□ 1.08
SHMT2-225ENST00000556798 RIPOR2Q9Y4F9 1068 aa21.8■■□□□ 1.08
SHMT2-225ENST00000556798 SUPT16HQ9Y5B9 1047 aaKnown RBP21.8■■□□□ 1.08
SHMT2-225ENST00000556798 SCN9AQ15858 1988 aa21.79■■□□□ 1.08
SHMT2-225ENST00000556798 SNAP23O00161 211 aa21.79■■□□□ 1.08
SHMT2-225ENST00000556798 ZBTB40Q9NUA8 1239 aa21.79■■□□□ 1.08
SHMT2-225ENST00000556798 EYA2O00167 538 aa21.78■■□□□ 1.08
SHMT2-225ENST00000556798 KCNJ4P48050 445 aa21.78■■□□□ 1.08
SHMT2-225ENST00000556798 CEP85Q6P2H3 762 aa21.78■■□□□ 1.08
SHMT2-225ENST00000556798 NIM1KQ8IY84 436 aa21.78■■□□□ 1.08
SHMT2-225ENST00000556798 ZNF526Q8TF50 670 aaPredicted RBP21.78■■□□□ 1.08
SHMT2-225ENST00000556798 JDP2Q8WYK2 163 aa21.78■■□□□ 1.08
SHMT2-225ENST00000556798 CRBNQ96SW2 442 aa21.78■■□□□ 1.08
SHMT2-225ENST00000556798 EYA3Q99504 573 aa21.78■■□□□ 1.08
SHMT2-225ENST00000556798 PSME4Q14997 1843 aa21.78■■□□□ 1.08
SHMT2-225ENST00000556798 ZNF804BA4D1E1 1349 aa21.78■■□□□ 1.08
SHMT2-225ENST00000556798 ZC3H4Q9UPT8 1303 aaKnown RBP21.78■■□□□ 1.08
SHMT2-225ENST00000556798 KLRK1P26718 216 aa21.77■■□□□ 1.08
SHMT2-225ENST00000556798 ATP8B2P98198 1209 aa21.77■■□□□ 1.08
SHMT2-225ENST00000556798 METTL24Q5JXM2 366 aa21.77■■□□□ 1.08
SHMT2-225ENST00000556798 COPRSQ9NQ92 184 aa21.77■■□□□ 1.08
SHMT2-225ENST00000556798 LEMD3Q9Y2U8 911 aa21.77■■□□□ 1.08
SHMT2-225ENST00000556798 MROH5Q6ZUA9 1318 aa21.77■■□□□ 1.07
SHMT2-225ENST00000556798 ZNF541Q9H0D2 1346 aa21.77■■□□□ 1.07
SHMT2-225ENST00000556798 MED23Q9ULK4 1368 aa21.76■■□□□ 1.07
SHMT2-225ENST00000556798 DOK7Q18PE1 504 aa21.76■■□□□ 1.07
SHMT2-225ENST00000556798 ATG9AQ7Z3C6 839 aa21.76■■□□□ 1.07
SHMT2-225ENST00000556798 ZC3H12CQ9C0D7 883 aaKnown RBP21.76■■□□□ 1.07
SHMT2-225ENST00000556798 VPS33BQ9H267 617 aa21.76■■□□□ 1.07
SHMT2-225ENST00000556798 CHMP4BQ9H444 224 aaKnown RBP21.76■■□□□ 1.07
SHMT2-225ENST00000556798 DBNDD1Q9H9R9 158 aa21.76■■□□□ 1.07
SHMT2-225ENST00000556798 POLA2Q14181 598 aa21.75■■□□□ 1.07
SHMT2-225ENST00000556798 ZNF646O15015 1829 aaPredicted RBP21.74■■□□□ 1.07
SHMT2-225ENST00000556798 FZD9O00144 591 aa21.74■■□□□ 1.07
SHMT2-225ENST00000556798 CIAO1O76071 339 aa21.74■■□□□ 1.07
SHMT2-225ENST00000556798 TXNRD3Q86VQ6 643 aa21.74■■□□□ 1.07
SHMT2-225ENST00000556798 VGLL2Q8N8G2 317 aa21.74■■□□□ 1.07
SHMT2-225ENST00000556798 SSH3Q8TE77 659 aa21.74■■□□□ 1.07
SHMT2-225ENST00000556798 ARAP2Q8WZ64 1704 aa21.74■■□□□ 1.07
SHMT2-225ENST00000556798 YDJCA8MPS7 323 aa21.73■■□□□ 1.07
SHMT2-225ENST00000556798 FBXO3Q9UK99 471 aa21.73■■□□□ 1.07
SHMT2-225ENST00000556798 MYH13Q9UKX3 1938 aa21.72■■□□□ 1.07
SHMT2-225ENST00000556798 ECE2O60344 883 aa21.72■■□□□ 1.07
SHMT2-225ENST00000556798 IL15P40933 162 aaPredicted RBP21.72■■□□□ 1.07
SHMT2-225ENST00000556798 ZNF784Q8NCA9 323 aaPredicted RBP21.72■■□□□ 1.07
SHMT2-225ENST00000556798 ZNRF3Q9ULT6 936 aa21.72■■□□□ 1.07
SHMT2-225ENST00000556798 IRS2Q9Y4H2 1338 aa21.72■■□□□ 1.07
SHMT2-225ENST00000556798 WDR90Q96KV7 1748 aa21.72■■□□□ 1.07
SHMT2-225ENST00000556798 G3V3G9 751 aa21.71■■□□□ 1.07
SHMT2-225ENST00000556798 PDE8BO95263 885 aa21.71■■□□□ 1.07
SHMT2-225ENST00000556798 EIF6P56537 245 aaKnown RBP21.71■■□□□ 1.07
SHMT2-225ENST00000556798 DCAF8Q5TAQ9 597 aa21.71■■□□□ 1.07
SHMT2-225ENST00000556798 GLTPD2A6NH11 291 aa21.7■■□□□ 1.06
SHMT2-225ENST00000556798 DDNO94850 711 aaPredicted RBP21.7■■□□□ 1.06
SHMT2-225ENST00000556798 UBE4AQ14139 1066 aa21.7■■□□□ 1.06
SHMT2-225ENST00000556798 SIRT2Q8IXJ6 389 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms