RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 ANKIB1Q9P2G1 1089 aa20.28■□□□□ 0.84
CHMP1A-209ENST00000550872 MINPP1Q9UNW1 487 aa20.28■□□□□ 0.84
CHMP1A-209ENST00000550872 SNED1Q8TER0 1413 aa20.27■□□□□ 0.84
CHMP1A-209ENST00000550872 SUPT20HQ8NEM7 779 aa20.27■□□□□ 0.84
CHMP1A-209ENST00000550872 CNNM1Q9NRU3 951 aa20.27■□□□□ 0.84
CHMP1A-209ENST00000550872 SBF1O95248 1867 aa20.26■□□□□ 0.83
CHMP1A-209ENST00000550872 SPEF2Q9C093 1822 aa20.26■□□□□ 0.83
CHMP1A-209ENST00000550872 C6orf229H3BNL8 230 aa20.26■□□□□ 0.83
CHMP1A-209ENST00000550872 RTFDC1Q9BY42 306 aaPredicted RBP20.26■□□□□ 0.83
CHMP1A-209ENST00000550872 CHMP4BQ9H444 224 aaKnown RBP20.26■□□□□ 0.83
CHMP1A-209ENST00000550872 C1orf115Q9H7X2 142 aa20.26■□□□□ 0.83
CHMP1A-209ENST00000550872 CCDC88AQ3V6T2 1871 aa20.26■□□□□ 0.83
CHMP1A-209ENST00000550872 IARSP41252 1262 aaKnown RBP20.25■□□□□ 0.83
CHMP1A-209ENST00000550872 RFX5P48382 616 aaPredicted RBP20.25■□□□□ 0.83
CHMP1A-209ENST00000550872 KLHDC4Q8TBB5 520 aa20.25■□□□□ 0.83
CHMP1A-209ENST00000550872 PUS3Q9BZE2 481 aaKnown RBP20.25■□□□□ 0.83
CHMP1A-209ENST00000550872 ANKRD2Q9GZV1 360 aa20.25■□□□□ 0.83
CHMP1A-209ENST00000550872 GPBP1L1Q9HC44 474 aaPredicted RBP20.25■□□□□ 0.83
CHMP1A-209ENST00000550872 PODXL2Q9NZ53 605 aa20.25■□□□□ 0.83
CHMP1A-209ENST00000550872 GGA1Q9UJY5 639 aa20.25■□□□□ 0.83
CHMP1A-209ENST00000550872 XDHP47989 1333 aa20.25■□□□□ 0.83
CHMP1A-209ENST00000550872 LRRC37AA6NMS7 1700 aa20.24■□□□□ 0.83
CHMP1A-209ENST00000550872 SRGAP3O43295 1099 aa20.24■□□□□ 0.83
CHMP1A-209ENST00000550872 CHRNDQ07001 517 aa20.24■□□□□ 0.83
CHMP1A-209ENST00000550872 MTX1Q13505 466 aa20.24■□□□□ 0.83
CHMP1A-209ENST00000550872 TBC1D16Q8TBP0 767 aa20.24■□□□□ 0.83
CHMP1A-209ENST00000550872 POLLQ9UGP5 575 aa20.24■□□□□ 0.83
CHMP1A-209ENST00000550872 SUPT16HQ9Y5B9 1047 aaKnown RBP20.24■□□□□ 0.83
CHMP1A-209ENST00000550872 PPIP5K2O43314 1243 aa20.23■□□□□ 0.83
CHMP1A-209ENST00000550872 UFL1O94874 794 aa20.23■□□□□ 0.83
CHMP1A-209ENST00000550872 ATP2B4P23634 1241 aa20.23■□□□□ 0.83
CHMP1A-209ENST00000550872 LARGE2Q8N3Y3 721 aa20.23■□□□□ 0.83
CHMP1A-209ENST00000550872 HELBQ8NG08 1087 aaPredicted RBP20.23■□□□□ 0.83
CHMP1A-209ENST00000550872 ATP8B2P98198 1209 aa20.22■□□□□ 0.83
CHMP1A-209ENST00000550872 PTPN12Q05209 780 aaKnown RBP20.22■□□□□ 0.83
CHMP1A-209ENST00000550872 AOC3Q16853 763 aa20.22■□□□□ 0.83
CHMP1A-209ENST00000550872 WASHC4Q2M389 1173 aa20.22■□□□□ 0.83
CHMP1A-209ENST00000550872 LRRC24Q50LG9 513 aa20.22■□□□□ 0.83
CHMP1A-209ENST00000550872 EYA3Q99504 573 aa20.22■□□□□ 0.83
CHMP1A-209ENST00000550872 VPS33BQ9H267 617 aa20.22■□□□□ 0.83
CHMP1A-209ENST00000550872 PNMA6EA0A0J9YXQ4 647 aa20.21■□□□□ 0.83
CHMP1A-209ENST00000550872 EYA2O00167 538 aa20.21■□□□□ 0.83
CHMP1A-209ENST00000550872 RIMBP2O15034 1052 aa20.21■□□□□ 0.83
CHMP1A-209ENST00000550872 TAF5LO75529 589 aa20.21■□□□□ 0.83
CHMP1A-209ENST00000550872 JDP2Q8WYK2 163 aa20.21■□□□□ 0.83
CHMP1A-209ENST00000550872 GPR101Q96P66 508 aaPredicted RBP20.21■□□□□ 0.83
CHMP1A-209ENST00000550872 ZBTB40Q9NUA8 1239 aa20.21■□□□□ 0.83
CHMP1A-209ENST00000550872 PA2G4Q9UQ80 394 aaKnown RBP20.21■□□□□ 0.83
CHMP1A-209ENST00000550872 LEMD3Q9Y2U8 911 aa20.21■□□□□ 0.83
CHMP1A-209ENST00000550872 RIPOR2Q9Y4F9 1068 aa20.21■□□□□ 0.83
CHMP1A-209ENST00000550872 KCNJ4P48050 445 aa20.2■□□□□ 0.82
CHMP1A-209ENST00000550872 KIAA2012Q0VF49 1180 aa20.2■□□□□ 0.82
CHMP1A-209ENST00000550872 ZC3H12CQ9C0D7 883 aaKnown RBP20.2■□□□□ 0.82
CHMP1A-209ENST00000550872 SIL1Q9H173 461 aa20.2■□□□□ 0.82
CHMP1A-209ENST00000550872 WTIPA6NIX2 430 aaPredicted RBP20.19■□□□□ 0.82
CHMP1A-209ENST00000550872 NIM1KQ8IY84 436 aa20.19■□□□□ 0.82
CHMP1A-209ENST00000550872 COPRSQ9NQ92 184 aa20.19■□□□□ 0.82
CHMP1A-209ENST00000550872 DUOX1Q9NRD9 1551 aa20.19■□□□□ 0.82
CHMP1A-209ENST00000550872 MROH5Q6ZUA9 1318 aa20.19■□□□□ 0.82
CHMP1A-209ENST00000550872 DICER1Q9UPY3 1922 aaKnown RBP20.18■□□□□ 0.82
CHMP1A-209ENST00000550872 METTL24Q5JXM2 366 aa20.18■□□□□ 0.82
CHMP1A-209ENST00000550872 CEP85Q6P2H3 762 aa20.18■□□□□ 0.82
CHMP1A-209ENST00000550872 FBXO3Q9UK99 471 aa20.18■□□□□ 0.82
CHMP1A-209ENST00000550872 ZNF804BA4D1E1 1349 aa20.18■□□□□ 0.82
CHMP1A-209ENST00000550872 G3V3G9 751 aa20.17■□□□□ 0.82
CHMP1A-209ENST00000550872 CIAO1O76071 339 aa20.17■□□□□ 0.82
CHMP1A-209ENST00000550872 DCAF8Q5TAQ9 597 aa20.17■□□□□ 0.82
CHMP1A-209ENST00000550872 SSH3Q8TE77 659 aa20.17■□□□□ 0.82
CHMP1A-209ENST00000550872 CRBNQ96SW2 442 aa20.17■□□□□ 0.82
CHMP1A-209ENST00000550872 ZC3H4Q9UPT8 1303 aaKnown RBP20.17■□□□□ 0.82
CHMP1A-209ENST00000550872 LTBP1Q14766 1721 aa20.16■□□□□ 0.82
CHMP1A-209ENST00000550872 SNAP23O00161 211 aa20.16■□□□□ 0.82
CHMP1A-209ENST00000550872 POLA2Q14181 598 aa20.16■□□□□ 0.82
CHMP1A-209ENST00000550872 ATG9AQ7Z3C6 839 aa20.16■□□□□ 0.82
CHMP1A-209ENST00000550872 RPAP2Q8IXW5 612 aaPredicted RBP20.16■□□□□ 0.82
CHMP1A-209ENST00000550872 IL15P40933 162 aaPredicted RBP20.15■□□□□ 0.82
CHMP1A-209ENST00000550872 EIF6P56537 245 aaKnown RBP20.15■□□□□ 0.82
CHMP1A-209ENST00000550872 DOK7Q18PE1 504 aa20.15■□□□□ 0.82
CHMP1A-209ENST00000550872 DPY19L2Q6NUT2 758 aa20.15■□□□□ 0.82
CHMP1A-209ENST00000550872 CEP126Q9P2H0 1117 aa20.15■□□□□ 0.82
CHMP1A-209ENST00000550872 FZD9O00144 591 aa20.14■□□□□ 0.81
CHMP1A-209ENST00000550872 PDE8BO95263 885 aa20.14■□□□□ 0.81
CHMP1A-209ENST00000550872 G3BP1Q13283 466 aaKnown RBP eCLIP20.14■□□□□ 0.81
CHMP1A-209ENST00000550872 DBNDD1Q9H9R9 158 aa20.14■□□□□ 0.81
CHMP1A-209ENST00000550872 ZNRF3Q9ULT6 936 aa20.14■□□□□ 0.81
CHMP1A-209ENST00000550872 COL4A5P29400 1685 aa20.13■□□□□ 0.81
CHMP1A-209ENST00000550872 MED23Q9ULK4 1368 aa20.13■□□□□ 0.81
CHMP1A-209ENST00000550872 UBE4AQ14139 1066 aa20.13■□□□□ 0.81
CHMP1A-209ENST00000550872 TXNRD3Q86VQ6 643 aa20.13■□□□□ 0.81
CHMP1A-209ENST00000550872 ZNF526Q8TF50 670 aaPredicted RBP20.13■□□□□ 0.81
CHMP1A-209ENST00000550872 GLTPD2A6NH11 291 aa20.12■□□□□ 0.81
CHMP1A-209ENST00000550872 ECE2O60344 883 aa20.12■□□□□ 0.81
CHMP1A-209ENST00000550872 HMMRO75330 724 aa20.12■□□□□ 0.81
CHMP1A-209ENST00000550872 SURF6O75683 361 aaKnown RBP20.12■□□□□ 0.81
CHMP1A-209ENST00000550872 HSPA6P17066 643 aa20.12■□□□□ 0.81
CHMP1A-209ENST00000550872 KLRK1P26718 216 aa20.12■□□□□ 0.81
CHMP1A-209ENST00000550872 VGLL2Q8N8G2 317 aa20.12■□□□□ 0.81
CHMP1A-209ENST00000550872 TIAM2Q8IVF5 1701 aa20.12■□□□□ 0.81
CHMP1A-209ENST00000550872 ZNF541Q9H0D2 1346 aa20.11■□□□□ 0.81
CHMP1A-209ENST00000550872 OS9Q13438 667 aaPredicted RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms