RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 TWISTNBQ3B726 338 aaPredicted RBP17.08■□□□□ 0.32
CPSF4-210ENST00000469897 RBM26Q5T8P6 1007 aaKnown RBP17.08■□□□□ 0.32
CPSF4-210ENST00000469897 G2E3Q7L622 706 aa17.08■□□□□ 0.32
CPSF4-210ENST00000469897 SAMD7Q7Z3H4 446 aa17.08■□□□□ 0.32
CPSF4-210ENST00000469897 USP48Q86UV5 1035 aa17.08■□□□□ 0.32
CPSF4-210ENST00000469897 DPF2Q92785 391 aa17.08■□□□□ 0.32
CPSF4-210ENST00000469897 CAPNS2Q96L46 248 aa17.08■□□□□ 0.32
CPSF4-210ENST00000469897 PODXL2Q9NZ53 605 aa17.08■□□□□ 0.32
CPSF4-210ENST00000469897 CDHR2Q9BYE9 1310 aa17.07■□□□□ 0.32
CPSF4-210ENST00000469897 G3V3G9 751 aa17.07■□□□□ 0.32
CPSF4-210ENST00000469897 LBX1P52954 281 aa17.07■□□□□ 0.32
CPSF4-210ENST00000469897 MAP2K1Q02750 393 aaPredicted RBP17.07■□□□□ 0.32
CPSF4-210ENST00000469897 TBC1D10BQ4KMP7 808 aaPredicted RBP17.07■□□□□ 0.32
CPSF4-210ENST00000469897 DCAF8Q5TAQ9 597 aa17.07■□□□□ 0.32
CPSF4-210ENST00000469897 DLK2Q6UY11 383 aa17.07■□□□□ 0.32
CPSF4-210ENST00000469897 CDC37L1Q7L3B6 337 aa17.07■□□□□ 0.32
CPSF4-210ENST00000469897 ZNF408Q9H9D4 720 aa17.07■□□□□ 0.32
CPSF4-210ENST00000469897 MRS2Q9HD23 443 aa17.07■□□□□ 0.32
CPSF4-210ENST00000469897 TLL2Q9Y6L7 1015 aa17.07■□□□□ 0.32
CPSF4-210ENST00000469897 UFL1O94874 794 aa17.06■□□□□ 0.32
CPSF4-210ENST00000469897 ECE1P42892 770 aa17.06■□□□□ 0.32
CPSF4-210ENST00000469897 CWF19L2Q2TBE0 894 aaKnown RBP17.06■□□□□ 0.32
CPSF4-210ENST00000469897 SAPCD2Q86UD0 394 aa17.06■□□□□ 0.32
CPSF4-210ENST00000469897 ANKRD18AQ8IVF6 992 aa17.06■□□□□ 0.32
CPSF4-210ENST00000469897 PRDM10Q9NQV6 1147 aa17.06■□□□□ 0.32
CPSF4-210ENST00000469897 GGA1Q9UJY5 639 aa17.06■□□□□ 0.32
CPSF4-210ENST00000469897 RTL9Q8NET4 1388 aa17.05■□□□□ 0.32
CPSF4-210ENST00000469897 WTIPA6NIX2 430 aaPredicted RBP17.05■□□□□ 0.32
CPSF4-210ENST00000469897 EGFRP00533 1210 aa17.05■□□□□ 0.32
CPSF4-210ENST00000469897 ZEB1P37275 1124 aaPredicted RBP17.05■□□□□ 0.32
CPSF4-210ENST00000469897 NEXNQ0ZGT2 675 aa17.05■□□□□ 0.32
CPSF4-210ENST00000469897 ZNF316A6NFI3 1004 aaPredicted RBP17.04■□□□□ 0.32
CPSF4-210ENST00000469897 ANP32CO43423 234 aa17.04■□□□□ 0.32
CPSF4-210ENST00000469897 VIL1P09327 827 aaKnown RBP17.04■□□□□ 0.32
CPSF4-210ENST00000469897 RPS12P25398 132 aaKnown RBP17.04■□□□□ 0.32
CPSF4-210ENST00000469897 TTLL11Q8NHH1 800 aa17.04■□□□□ 0.32
CPSF4-210ENST00000469897 COL4A1P02462 1669 aa17.04■□□□□ 0.32
CPSF4-210ENST00000469897 DUOX1Q9NRD9 1551 aa17.03■□□□□ 0.32
CPSF4-210ENST00000469897 IL16Q14005 1332 aa17.03■□□□□ 0.32
CPSF4-210ENST00000469897 NEURL1BA8MQ27 555 aa17.03■□□□□ 0.32
CPSF4-210ENST00000469897 AOC2O75106 756 aa17.03■□□□□ 0.32
CPSF4-210ENST00000469897 CTSWP56202 376 aa17.03■□□□□ 0.32
CPSF4-210ENST00000469897 H7C1W4 665 aa17.02■□□□□ 0.32
CPSF4-210ENST00000469897 HSPA8P11142 646 aaKnown RBP17.02■□□□□ 0.32
CPSF4-210ENST00000469897 ATP2B4P23634 1241 aa17.02■□□□□ 0.32
CPSF4-210ENST00000469897 NCBP3Q53F19 620 aaKnown RBP17.02■□□□□ 0.32
CPSF4-210ENST00000469897 CDC5LQ99459 802 aaKnown RBP17.02■□□□□ 0.32
CPSF4-210ENST00000469897 GREM2Q9H772 168 aa17.02■□□□□ 0.32
CPSF4-210ENST00000469897 MINPP1Q9UNW1 487 aa17.02■□□□□ 0.32
CPSF4-210ENST00000469897 ANKRD36CQ5JPF3 1778 aa17.02■□□□□ 0.31
CPSF4-210ENST00000469897 XDHP47989 1333 aa17.01■□□□□ 0.31
CPSF4-210ENST00000469897 VAMP4O75379 141 aa17.01■□□□□ 0.31
CPSF4-210ENST00000469897 WDR63Q8IWG1 891 aa17.01■□□□□ 0.31
CPSF4-210ENST00000469897 DCPSQ96C86 337 aaKnown RBP17.01■□□□□ 0.31
CPSF4-210ENST00000469897 BEGAINQ9BUH8 593 aa17.01■□□□□ 0.31
CPSF4-210ENST00000469897 LAMB2P55268 1798 aa17.01■□□□□ 0.31
CPSF4-210ENST00000469897 MAP2K2P36507 400 aa17■□□□□ 0.31
CPSF4-210ENST00000469897 FLIIQ13045 1269 aa17■□□□□ 0.31
CPSF4-210ENST00000469897 GCKRQ14397 625 aa17■□□□□ 0.31
CPSF4-210ENST00000469897 UBE3BQ7Z3V4 1068 aa17■□□□□ 0.31
CPSF4-210ENST00000469897 KRT26Q7Z3Y9 468 aa17■□□□□ 0.31
CPSF4-210ENST00000469897 BSDC1Q9NW68 430 aaPredicted RBP17■□□□□ 0.31
CPSF4-210ENST00000469897 FANCIQ9NVI1 1328 aa16.99■□□□□ 0.31
CPSF4-210ENST00000469897 TAF1P21675 1872 aa16.99■□□□□ 0.31
CPSF4-210ENST00000469897 DDX60Q8IY21 1712 aaKnown RBP16.99■□□□□ 0.31
CPSF4-210ENST00000469897 ADM5C9JUS6 153 aa16.99■□□□□ 0.31
CPSF4-210ENST00000469897 EXOSC9Q06265 439 aaKnown RBP16.99■□□□□ 0.31
CPSF4-210ENST00000469897 FKBP5Q13451 457 aaPredicted RBP16.99■□□□□ 0.31
CPSF4-210ENST00000469897 KIF4BQ2VIQ3 1234 aa16.99■□□□□ 0.31
CPSF4-210ENST00000469897 RSBN1LQ6PCB5 846 aaPredicted RBP16.99■□□□□ 0.31
CPSF4-210ENST00000469897 HHIPL1Q96JK4 782 aa16.99■□□□□ 0.31
CPSF4-210ENST00000469897 ASTN2O75129 1339 aaPredicted RBP16.98■□□□□ 0.31
CPSF4-210ENST00000469897 PODNQ7Z5L7 613 aa16.98■□□□□ 0.31
CPSF4-210ENST00000469897 AGBL3Q8NEM8 1001 aa16.98■□□□□ 0.31
CPSF4-210ENST00000469897 DNAAF4Q8WXU2 420 aa16.98■□□□□ 0.31
CPSF4-210ENST00000469897 SPINK5Q9NQ38 1064 aaPredicted RBP16.98■□□□□ 0.31
CPSF4-210ENST00000469897 TSKSQ9UJT2 592 aa16.98■□□□□ 0.31
CPSF4-210ENST00000469897 USP17L3A6NCW0 530 aa16.97■□□□□ 0.31
CPSF4-210ENST00000469897 USP17L4A6NCW7 530 aa16.97■□□□□ 0.31
CPSF4-210ENST00000469897 CCT4P50991 539 aaKnown RBP16.97■□□□□ 0.31
CPSF4-210ENST00000469897 HUNKP57058 714 aa16.97■□□□□ 0.31
CPSF4-210ENST00000469897 SCARF1Q14162 830 aa16.97■□□□□ 0.31
CPSF4-210ENST00000469897 USP17L1Q7RTZ2 530 aa16.97■□□□□ 0.31
CPSF4-210ENST00000469897 FAM9BQ8IZU0 186 aa16.97■□□□□ 0.31
CPSF4-210ENST00000469897 LINS1Q8NG48 757 aa16.97■□□□□ 0.31
CPSF4-210ENST00000469897 CSF1RP07333 972 aa16.96■□□□□ 0.31
CPSF4-210ENST00000469897 USP17L8P0C7I0 530 aa16.96■□□□□ 0.31
CPSF4-210ENST00000469897 ITGA6P23229 1130 aa16.96■□□□□ 0.31
CPSF4-210ENST00000469897 IGHMBP2P38935 993 aaKnown RBP16.96■□□□□ 0.31
CPSF4-210ENST00000469897 CASP7P55210 303 aa16.96■□□□□ 0.31
CPSF4-210ENST00000469897 ZNF280AP59817 542 aaPredicted RBP16.96■□□□□ 0.31
CPSF4-210ENST00000469897 C2orf69Q8N8R5 385 aa16.96■□□□□ 0.31
CPSF4-210ENST00000469897 ZIC5Q96T25 663 aa16.96■□□□□ 0.31
CPSF4-210ENST00000469897 GMLQ99445 158 aa16.96■□□□□ 0.31
CPSF4-210ENST00000469897 MYH16Q9H6N6 1097 aa16.96■□□□□ 0.31
CPSF4-210ENST00000469897 ANGEL2Q5VTE6 544 aaKnown RBP16.95■□□□□ 0.3
CPSF4-210ENST00000469897 TXNRD3Q86VQ6 643 aa16.95■□□□□ 0.3
CPSF4-210ENST00000469897 SULF1Q8IWU6 871 aa16.95■□□□□ 0.3
CPSF4-210ENST00000469897 MXD3Q9BW11 206 aa16.95■□□□□ 0.3
CPSF4-210ENST00000469897 PLA2G12BQ9BX93 195 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms