RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TSKSQ9UJT2 592 aa15.53■□□□□ 0.08
PTPRF-208ENST00000437607 ZBTB12Q9Y330 459 aaPredicted RBP15.53■□□□□ 0.08
PTPRF-208ENST00000437607 HOXB7P09629 217 aa15.52■□□□□ 0.08
PTPRF-208ENST00000437607 MAP2K2P36507 400 aa15.52■□□□□ 0.08
PTPRF-208ENST00000437607 DLK2Q6UY11 383 aa15.52■□□□□ 0.08
PTPRF-208ENST00000437607 MICALL2Q8IY33 904 aa15.52■□□□□ 0.08
PTPRF-208ENST00000437607 DBF4Q9UBU7 674 aaPredicted RBP15.52■□□□□ 0.08
PTPRF-208ENST00000437607 POLLQ9UGP5 575 aa15.52■□□□□ 0.08
PTPRF-208ENST00000437607 PSMD14O00487 310 aa15.51■□□□□ 0.07
PTPRF-208ENST00000437607 EGFRP00533 1210 aa15.51■□□□□ 0.07
PTPRF-208ENST00000437607 GPSM2P81274 684 aa15.51■□□□□ 0.07
PTPRF-208ENST00000437607 RTL5Q5HYW3 569 aaPredicted RBP15.51■□□□□ 0.07
PTPRF-208ENST00000437607 HHIPL1Q96JK4 782 aa15.51■□□□□ 0.07
PTPRF-208ENST00000437607 DBNDD1Q9H9R9 158 aa15.51■□□□□ 0.07
PTPRF-208ENST00000437607 KCNQ5Q9NR82 932 aa15.51■□□□□ 0.07
PTPRF-208ENST00000437607 RTL9Q8NET4 1388 aa15.5■□□□□ 0.07
PTPRF-208ENST00000437607 RIMBP2O15034 1052 aa15.5■□□□□ 0.07
PTPRF-208ENST00000437607 CT47B1P0C2W7 299 aaPredicted RBP15.5■□□□□ 0.07
PTPRF-208ENST00000437607 WASHC4Q2M389 1173 aa15.5■□□□□ 0.07
PTPRF-208ENST00000437607 CDC37L1Q7L3B6 337 aa15.5■□□□□ 0.07
PTPRF-208ENST00000437607 SAMD7Q7Z3H4 446 aa15.5■□□□□ 0.07
PTPRF-208ENST00000437607 ZNF408Q9H9D4 720 aa15.5■□□□□ 0.07
PTPRF-208ENST00000437607 NSFL1CQ9UNZ2 370 aaKnown RBP15.5■□□□□ 0.07
PTPRF-208ENST00000437607 H7C1D1 291 aa15.49■□□□□ 0.07
PTPRF-208ENST00000437607 EXOSC9Q06265 439 aaKnown RBP15.49■□□□□ 0.07
PTPRF-208ENST00000437607 TRIM28Q13263 835 aaKnown RBP15.49■□□□□ 0.07
PTPRF-208ENST00000437607 USP48Q86UV5 1035 aa15.49■□□□□ 0.07
PTPRF-208ENST00000437607 DPF2Q92785 391 aa15.49■□□□□ 0.07
PTPRF-208ENST00000437607 ZIC5Q96T25 663 aa15.49■□□□□ 0.07
PTPRF-208ENST00000437607 BEGAINQ9BUH8 593 aa15.49■□□□□ 0.07
PTPRF-208ENST00000437607 HYPKQ9NX55 129 aa15.49■□□□□ 0.07
PTPRF-208ENST00000437607 RCAN3Q9UKA8 241 aa15.49■□□□□ 0.07
PTPRF-208ENST00000437607 IRS4O14654 1257 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-208ENST00000437607 ECE2O60344 883 aa15.48■□□□□ 0.07
PTPRF-208ENST00000437607 TBC1D10BQ4KMP7 808 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-208ENST00000437607 PHAXQ9H814 394 aaKnown RBP15.48■□□□□ 0.07
PTPRF-208ENST00000437607 CACNA1FO60840 1977 aa15.47■□□□□ 0.07
PTPRF-208ENST00000437607 C6orf229H3BNL8 230 aa15.47■□□□□ 0.07
PTPRF-208ENST00000437607 BRPF1P55201 1214 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-208ENST00000437607 DOK7Q18PE1 504 aa15.47■□□□□ 0.07
PTPRF-208ENST00000437607 TBC1D16Q8TBP0 767 aa15.47■□□□□ 0.07
PTPRF-208ENST00000437607 SEC31BQ9NQW1 1179 aa15.47■□□□□ 0.07
PTPRF-208ENST00000437607 RPS8P62241 208 aaKnown RBP15.46■□□□□ 0.07
PTPRF-208ENST00000437607 A0A1B0GUL6 1792 aa15.45■□□□□ 0.06
PTPRF-208ENST00000437607 ADM5C9JUS6 153 aa15.45■□□□□ 0.06
PTPRF-208ENST00000437607 HUNKP57058 714 aa15.45■□□□□ 0.06
PTPRF-208ENST00000437607 TWISTNBQ3B726 338 aaPredicted RBP15.45■□□□□ 0.06
PTPRF-208ENST00000437607 ZBTB38Q8NAP3 1195 aaPredicted RBP15.45■□□□□ 0.06
PTPRF-208ENST00000437607 PODXL2Q9NZ53 605 aa15.45■□□□□ 0.06
PTPRF-208ENST00000437607 FAM155AB1AL88 458 aaPredicted RBP15.44■□□□□ 0.06
PTPRF-208ENST00000437607 CA12O43570 354 aa15.44■□□□□ 0.06
PTPRF-208ENST00000437607 RPS12P25398 132 aaKnown RBP15.44■□□□□ 0.06
PTPRF-208ENST00000437607 FAM161AQ3B820 660 aa15.44■□□□□ 0.06
PTPRF-208ENST00000437607 RBM26Q5T8P6 1007 aaKnown RBP15.44■□□□□ 0.06
PTPRF-208ENST00000437607 RIC3Q7Z5B4 369 aa15.44■□□□□ 0.06
PTPRF-208ENST00000437607 EYA3Q99504 573 aa15.44■□□□□ 0.06
PTPRF-208ENST00000437607 MYD88Q99836 296 aa15.44■□□□□ 0.06
PTPRF-208ENST00000437607 ASTN2O75129 1339 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-208ENST00000437607 ZNF609O15014 1411 aa15.43■□□□□ 0.06
PTPRF-208ENST00000437607 CCDC85CA6NKD9 419 aa15.43■□□□□ 0.06
PTPRF-208ENST00000437607 ELL2O00472 640 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-208ENST00000437607 VIL1P09327 827 aaKnown RBP15.43■□□□□ 0.06
PTPRF-208ENST00000437607 KRT26Q7Z3Y9 468 aa15.43■□□□□ 0.06
PTPRF-208ENST00000437607 JARID2Q92833 1246 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-208ENST00000437607 PCCAP05165 728 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-208ENST00000437607 RGS19P49795 217 aa15.42■□□□□ 0.06
PTPRF-208ENST00000437607 NOGQ13253 232 aa15.42■□□□□ 0.06
PTPRF-208ENST00000437607 RGMBQ6NW40 437 aa15.42■□□□□ 0.06
PTPRF-208ENST00000437607 C8orf58Q8NAV2 365 aa15.42■□□□□ 0.06
PTPRF-208ENST00000437607 MCOLN1Q9GZU1 580 aa15.42■□□□□ 0.06
PTPRF-208ENST00000437607 SMC4Q9NTJ3 1288 aa15.42■□□□□ 0.06
PTPRF-208ENST00000437607 ECM29Q5VYK3 1845 aa15.42■□□□□ 0.06
PTPRF-208ENST00000437607 PAPPA2Q9BXP8 1791 aa15.41■□□□□ 0.06
PTPRF-208ENST00000437607 UFL1O94874 794 aa15.41■□□□□ 0.06
PTPRF-208ENST00000437607 NEFLP07196 543 aa15.41■□□□□ 0.06
PTPRF-208ENST00000437607 KIF4BQ2VIQ3 1234 aa15.41■□□□□ 0.06
PTPRF-208ENST00000437607 TSPYL6Q8N831 410 aa15.41■□□□□ 0.06
PTPRF-208ENST00000437607 CCDC191Q8NCU4 936 aa15.41■□□□□ 0.06
PTPRF-208ENST00000437607 DCPSQ96C86 337 aaKnown RBP15.41■□□□□ 0.06
PTPRF-208ENST00000437607 ZC3H12CQ9C0D7 883 aaKnown RBP15.41■□□□□ 0.06
PTPRF-208ENST00000437607 GBA2Q9HCG7 927 aaPredicted RBP15.41■□□□□ 0.06
PTPRF-208ENST00000437607 KIF16BQ96L93 1317 aa15.41■□□□□ 0.06
PTPRF-208ENST00000437607 WTIPA6NIX2 430 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-208ENST00000437607 PDE8AO60658 829 aa15.4■□□□□ 0.06
PTPRF-208ENST00000437607 RARSP54136 660 aaKnown RBP15.4■□□□□ 0.06
PTPRF-208ENST00000437607 ALDH1L2Q3SY69 923 aa15.4■□□□□ 0.06
PTPRF-208ENST00000437607 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-208ENST00000437607 CCDC85AQ96PX6 553 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-208ENST00000437607 METTL22Q9BUU2 404 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-208ENST00000437607 CHMP4AQ9BY43 222 aa15.4■□□□□ 0.06
PTPRF-208ENST00000437607 GGA3Q9NZ52 723 aa15.4■□□□□ 0.06
PTPRF-208ENST00000437607 ANKIB1Q9P2G1 1089 aa15.4■□□□□ 0.06
PTPRF-208ENST00000437607 GGA1Q9UJY5 639 aa15.4■□□□□ 0.06
PTPRF-208ENST00000437607 SUPT16HQ9Y5B9 1047 aaKnown RBP15.4■□□□□ 0.06
PTPRF-208ENST00000437607 RRP1P56182 461 aaKnown RBP15.39■□□□□ 0.05
PTPRF-208ENST00000437607 ZNF280AP59817 542 aaPredicted RBP15.39■□□□□ 0.05
PTPRF-208ENST00000437607 CCDC152Q4G0S7 254 aa15.39■□□□□ 0.05
PTPRF-208ENST00000437607 CDCA5Q96FF9 252 aa15.39■□□□□ 0.05
PTPRF-208ENST00000437607 GMLQ99445 158 aa15.39■□□□□ 0.05
PTPRF-208ENST00000437607 CWC25Q9NXE8 425 aaPredicted RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms