RNA–Protein interactions for RNA: ENST00000315571.5

LDLRAD3-201, Transcript of low density lipoprotein receptor class A domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDLRAD3, Length 3,798 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAD3-201ENST00000315571 ZNF496Q96IT1 587 aaPredicted RBP13.72□□□□□ -0.21
LDLRAD3-201ENST00000315571 DDX19BQ9UMR2 479 aa13.72□□□□□ -0.21
LDLRAD3-201ENST00000315571 NRDCO43847 1150 aa13.72□□□□□ -0.21
LDLRAD3-201ENST00000315571 CDC45O75419 566 aa13.72□□□□□ -0.21
LDLRAD3-201ENST00000315571 EIF2S2P20042 333 aaKnown RBP13.72□□□□□ -0.21
LDLRAD3-201ENST00000315571 NECTIN2Q92692 538 aa13.72□□□□□ -0.21
LDLRAD3-201ENST00000315571 CXorf56Q9H5V9 222 aa13.72□□□□□ -0.21
LDLRAD3-201ENST00000315571 SPTLC3Q9NUV7 552 aa13.72□□□□□ -0.21
LDLRAD3-201ENST00000315571 SUFUQ9UMX1 484 aa13.72□□□□□ -0.21
LDLRAD3-201ENST00000315571 ZRSR1Q15695 479 aaKnown RBP13.71□□□□□ -0.21
LDLRAD3-201ENST00000315571 ASAP1Q9ULH1 1129 aa13.71□□□□□ -0.21
LDLRAD3-201ENST00000315571 KAT6BQ8WYB5 2073 aa13.71□□□□□ -0.21
LDLRAD3-201ENST00000315571 CTIFO43310 598 aaKnown RBP13.71□□□□□ -0.21
LDLRAD3-201ENST00000315571 BRPF1P55201 1214 aaPredicted RBP13.71□□□□□ -0.21
LDLRAD3-201ENST00000315571 CCDC183Q5T5S1 534 aa13.71□□□□□ -0.21
LDLRAD3-201ENST00000315571 HDGFL1Q5TGJ6 251 aa13.71□□□□□ -0.21
LDLRAD3-201ENST00000315571 STK31Q9BXU1 1019 aa13.71□□□□□ -0.21
LDLRAD3-201ENST00000315571 SATB1Q01826 763 aa13.71□□□□□ -0.22
LDLRAD3-201ENST00000315571 FILIP1Q7Z7B0 1213 aa13.71□□□□□ -0.22
LDLRAD3-201ENST00000315571 SSH1Q8WYL5 1049 aa13.71□□□□□ -0.22
LDLRAD3-201ENST00000315571 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.71□□□□□ -0.22
LDLRAD3-201ENST00000315571 SOS1Q07889 1333 aaPredicted RBP13.71□□□□□ -0.22
LDLRAD3-201ENST00000315571 BCL9O00512 1426 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 KCNQ2O43526 872 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 REC8O95072 547 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 CHD1LQ86WJ1 897 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 MICALL1Q8N3F8 863 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 ALDH1L2Q3SY69 923 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 CCDC30Q5VVM6 783 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 FAM196AQ6ZSG2 479 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 SLU7O95391 586 aaKnown RBP13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 HOXB7P09629 217 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 DDIT3P35638 169 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 BIRC2Q13490 618 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 ATG3Q9NT62 314 aa13.7□□□□□ -0.22
LDLRAD3-201ENST00000315571 H0YHG0 523 aa13.69□□□□□ -0.22
LDLRAD3-201ENST00000315571 GOLGA6L19H0YKK7 550 aa13.69□□□□□ -0.22
LDLRAD3-201ENST00000315571 GIGYF1O75420 1035 aaPredicted RBP13.69□□□□□ -0.22
LDLRAD3-201ENST00000315571 SNRPA1P09661 255 aaKnown RBP13.69□□□□□ -0.22
LDLRAD3-201ENST00000315571 SARNPP82979 210 aaKnown RBP13.69□□□□□ -0.22
LDLRAD3-201ENST00000315571 ARHGAP29Q52LW3 1261 aa13.69□□□□□ -0.22
LDLRAD3-201ENST00000315571 FAM43BQ6ZT52 329 aaPredicted RBP13.69□□□□□ -0.22
LDLRAD3-201ENST00000315571 CCDC192P0DO97 292 aa13.69□□□□□ -0.22
LDLRAD3-201ENST00000315571 NOP2P46087 812 aaKnown RBP13.69□□□□□ -0.22
LDLRAD3-201ENST00000315571 TOGARAM1Q9Y4F4 1720 aa13.69□□□□□ -0.22
LDLRAD3-201ENST00000315571 GADD45BO75293 160 aaPredicted RBP13.68□□□□□ -0.22
LDLRAD3-201ENST00000315571 RDXP35241 583 aaKnown RBP13.68□□□□□ -0.22
LDLRAD3-201ENST00000315571 SSR1P43307 286 aaKnown RBP13.68□□□□□ -0.22
LDLRAD3-201ENST00000315571 ERCC6LQ2NKX8 1250 aa13.68□□□□□ -0.22
LDLRAD3-201ENST00000315571 SMARCC1Q92922 1105 aaPredicted RBP13.68□□□□□ -0.22
LDLRAD3-201ENST00000315571 MPHOSPH10O00566 681 aaKnown RBP13.68□□□□□ -0.22
LDLRAD3-201ENST00000315571 DOT1LQ8TEK3 1739 aa13.68□□□□□ -0.22
LDLRAD3-201ENST00000315571 VIRMAQ69YN4 1812 aaKnown RBP13.68□□□□□ -0.22
LDLRAD3-201ENST00000315571 ZCCHC17Q9NP64 241 aaKnown RBP13.68□□□□□ -0.22
LDLRAD3-201ENST00000315571 RGS12O14924 1447 aa13.67□□□□□ -0.22
LDLRAD3-201ENST00000315571 RNF20Q5VTR2 975 aa13.67□□□□□ -0.22
LDLRAD3-201ENST00000315571 USP48Q86UV5 1035 aa13.67□□□□□ -0.22
LDLRAD3-201ENST00000315571 LCMT1Q9UIC8 334 aa13.67□□□□□ -0.22
LDLRAD3-201ENST00000315571 PRAMEF22A3QJZ6 481 aa13.67□□□□□ -0.22
LDLRAD3-201ENST00000315571 ERO1AQ96HE7 468 aa13.67□□□□□ -0.22
LDLRAD3-201ENST00000315571 SIPA1L3O60292 1781 aaPredicted RBP13.67□□□□□ -0.22
LDLRAD3-201ENST00000315571 KDM3BQ7LBC6 1761 aa13.67□□□□□ -0.22
LDLRAD3-201ENST00000315571 HEG1Q9ULI3 1381 aa13.67□□□□□ -0.22
LDLRAD3-201ENST00000315571 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.67□□□□□ -0.22
LDLRAD3-201ENST00000315571 IPO8O15397 1037 aaKnown RBP13.66□□□□□ -0.22
LDLRAD3-201ENST00000315571 SMARCA5O60264 1052 aaPredicted RBP13.66□□□□□ -0.22
LDLRAD3-201ENST00000315571 SLC4A2P04920 1241 aa13.66□□□□□ -0.22
LDLRAD3-201ENST00000315571 CAMK4Q16566 473 aa13.66□□□□□ -0.22
LDLRAD3-201ENST00000315571 CNKSR2Q8WXI2 1034 aa13.66□□□□□ -0.22
LDLRAD3-201ENST00000315571 C1orf115Q9H7X2 142 aa13.66□□□□□ -0.22
LDLRAD3-201ENST00000315571 MRPL50Q8N5N7 158 aaKnown RBP13.66□□□□□ -0.22
LDLRAD3-201ENST00000315571 OAS2P29728 719 aaKnown RBP13.65□□□□□ -0.22
LDLRAD3-201ENST00000315571 CLIP2Q9UDT6 1046 aa13.65□□□□□ -0.22
LDLRAD3-201ENST00000315571 PALLDQ8WX93 1383 aa13.65□□□□□ -0.22
LDLRAD3-201ENST00000315571 BECN2A8MW95 431 aa13.65□□□□□ -0.22
LDLRAD3-201ENST00000315571 MCCP23508 829 aa13.65□□□□□ -0.22
LDLRAD3-201ENST00000315571 USP8P40818 1118 aa13.65□□□□□ -0.22
LDLRAD3-201ENST00000315571 SYCP1Q15431 976 aa13.65□□□□□ -0.22
LDLRAD3-201ENST00000315571 PPM1EQ8WY54 764 aa13.65□□□□□ -0.22
LDLRAD3-201ENST00000315571 SMARCE1Q969G3 411 aa13.65□□□□□ -0.22
LDLRAD3-201ENST00000315571 ST5P78524 1137 aa13.65□□□□□ -0.23
LDLRAD3-201ENST00000315571 TEX13AQ9BXU3 409 aaPredicted RBP13.65□□□□□ -0.23
LDLRAD3-201ENST00000315571 NOB1Q9ULX3 412 aaKnown RBP13.65□□□□□ -0.23
LDLRAD3-201ENST00000315571 NEBLO76041 1014 aa13.64□□□□□ -0.23
LDLRAD3-201ENST00000315571 TRIM37O94972 964 aa13.64□□□□□ -0.23
LDLRAD3-201ENST00000315571 PTF1AQ7RTS3 328 aa13.64□□□□□ -0.23
LDLRAD3-201ENST00000315571 FAM177A1Q8N128 213 aaPredicted RBP13.64□□□□□ -0.23
LDLRAD3-201ENST00000315571 CHPF2Q9P2E5 772 aa13.64□□□□□ -0.23
LDLRAD3-201ENST00000315571 USP16Q9Y5T5 823 aa13.64□□□□□ -0.23
LDLRAD3-201ENST00000315571 IVLP07476 585 aa13.64□□□□□ -0.23
LDLRAD3-201ENST00000315571 CASTP20810 708 aaKnown RBP13.64□□□□□ -0.23
LDLRAD3-201ENST00000315571 HSP90B2PQ58FF3 399 aa13.64□□□□□ -0.23
LDLRAD3-201ENST00000315571 EGFL6Q8IUX8 553 aa13.64□□□□□ -0.23
LDLRAD3-201ENST00000315571 DBF4Q9UBU7 674 aaPredicted RBP13.64□□□□□ -0.23
LDLRAD3-201ENST00000315571 STARD3NLO95772 234 aa13.63□□□□□ -0.23
LDLRAD3-201ENST00000315571 TPM1P09493 284 aa13.63□□□□□ -0.23
LDLRAD3-201ENST00000315571 BMP2KLQ5H9B9 411 aa13.63□□□□□ -0.23
LDLRAD3-201ENST00000315571 INTS3Q68E01 1043 aaKnown RBP13.63□□□□□ -0.23
LDLRAD3-201ENST00000315571 DNAJC10Q8IXB1 793 aa13.63□□□□□ -0.23
LDLRAD3-201ENST00000315571 FBXW7Q969H0 707 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms