RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 NPAS2Q99743 824 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 ZNF670Q9BS34 389 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 FUNDC2Q9BWH2 189 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 OSBPL8Q9BZF1 889 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 SLC25A51Q9H1U9 297 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 LIN28AQ9H9Z2 209 aaKnown RBP2.11□□□□□ -2.07
SCFD1-219ENST00000556413 TIGARQ9NQ88 270 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 AGPAT4Q9NRZ5 378 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 EURLQ9NYK6 297 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 SEC14L3Q9UDX4 400 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 FAM153AQ9UHL3 310 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 C3orf18Q9UK00 162 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 PACSIN2Q9UNF0 486 aaPredicted RBP2.11□□□□□ -2.07
SCFD1-219ENST00000556413 ASF1AQ9Y294 204 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 RPH3AQ9Y2J0 694 aaPredicted RBP2.11□□□□□ -2.07
SCFD1-219ENST00000556413 ATG4BQ9Y4P1 393 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 F8P00451 2351 aa2.11□□□□□ -2.07
SCFD1-219ENST00000556413 SPTBN1Q01082 2364 aaKnown RBP2.11□□□□□ -2.07
SCFD1-219ENST00000556413 MED13Q9UHV7 2174 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 PDZD2O15018 2839 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 ITPR2Q14571 2701 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 hCG_1818297A0A087WSY0 165 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 NSG1A0A0A6YYJ2 146 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 LOC285095A0A1B0GVY8 99 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 A0A1B0GX78 115 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 SYCE3A1L190 88 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 CTAGE15A4D2H0 777 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 C5orf51A6NDU8 294 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 SGK494L7N484 410 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 SH2D1BO14796 132 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TOX3O15405 576 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 SPOPO43791 374 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 SLC19A2O60779 497 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 NIPSNAP2O75323 286 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 RDH16O75452 317 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 GMNNO75496 209 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 GAS8O95995 478 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 GYPCP04921 128 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 HEXBP07686 556 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 STSP08842 583 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 UROSP10746 265 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 ATP1B2P14415 290 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 ETS1P14921 441 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 ABOP16442 354 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 IL1RNP18510 177 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 MMP11P24347 488 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 CCR7P32248 378 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 COILP38432 576 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 CDKN2BP42772 138 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 NSG1P42857 185 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 CA7P43166 264 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TRPC1P48995 793 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 SNU13P55769 128 aaKnown RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 RPL26P61254 145 aaKnown RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 HERV-K104P63124 156 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 OC90Q02509 493 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 ASAH1Q13510 395 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 CUL1Q13616 776 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 PIGHQ14442 188 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 GRB7Q14451 532 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 ESPL1Q14674 2120 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 PDK1Q15118 436 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 ZNF630Q2M218 657 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 BCL7AQ4VC05 210 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TEX44Q53QW1 395 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TCHHL1Q5QJ38 904 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 LDLRAP1Q5SW96 308 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 AGBL2Q5U5Z8 902 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 ISLR2Q6UXK2 745 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 WASH2PQ6VEQ5 465 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 MBOAT1Q6ZNC8 495 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 NLRP9Q7RTR0 991 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 CTAGE6Q86UF2 777 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TGIF2LYQ8IUE0 185 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 CRLF3Q8IUI8 442 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 NKAIN3Q8N8D7 197 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 NAT8LQ8N9F0 302 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 DNAAF3Q8N9W5 541 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TTC29Q8NA56 475 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 WFDC11Q8NEX6 87 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 OR5T3Q8NGG3 340 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 OR52K1Q8NGK4 314 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 OR9A4Q8NGU2 314 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TFB1MQ8WVM0 346 aaKnown RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 PSMF1Q92530 271 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TFGQ92734 400 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TADA1Q96BN2 335 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 CABS1Q96KC9 395 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TSGA13Q96PP4 275 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 COPS8Q99627 209 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 CHP1Q99653 195 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 KIR2DL4Q99706 377 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TBL1YQ9BQ87 522 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 SELENOSQ9BQE4 189 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 ATG10Q9H0Y0 220 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 DEFB127Q9H1M4 99 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 GBA3Q9H227 469 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 RHBGQ9H310 441 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 DCLRE1BQ9H816 532 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 MRPL47Q9HD33 250 aaKnown RBP2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 203 ms