RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ZNF454Q8N9F8 522 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 CT45A3Q8NHU0 189 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 AMBRA1Q9C0C7 1298 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 PMS2P1A4D2B8 440 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 SLC22A20A6NK97 555 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 GLRA1P23415 457 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 GCAP28676 217 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 C1orf210Q8IVY1 113 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 CPNE4Q96A23 557 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-201ENST00000359947 TRMT61AQ96FX7 289 aaKnown RBP14.27□□□□□ -0.13
PTPRF-201ENST00000359947 TSSK2Q96PF2 358 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 DHRS4Q9BTZ2 278 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 PLA2G2FQ9BZM2 168 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 WBP1LQ9NX94 342 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 ZNF705FA8MVS1 300 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-201ENST00000359947 H0Y8G0 127 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 RGS11O94810 467 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 ZNF705DP0CH99 300 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-201ENST00000359947 ZNF705BP0CI00 300 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-201ENST00000359947 ZNF728P0DKX0 622 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 TPT1P13693 172 aaKnown RBP14.27□□□□□ -0.13
PTPRF-201ENST00000359947 MAP2K6P52564 334 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 ALKBH1Q13686 389 aaKnown RBP14.27□□□□□ -0.13
PTPRF-201ENST00000359947 DMRTC1Q5HYR2 192 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 LYPD4Q6UWN0 246 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 USP51Q70EK9 711 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 ANGPTL5Q86XS5 388 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 SLC22A24Q8N4F4 322 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.27□□□□□ -0.13
PTPRF-201ENST00000359947 KCNG3Q8TAE7 436 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 CHST11Q9NPF2 352 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 PPP1R3CQ9UQK1 317 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 ANKRD36CQ5JPF3 1778 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 POLR2IP36954 125 aaKnown RBP14.27□□□□□ -0.13
PTPRF-201ENST00000359947 Q6ZSR9 355 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 OR2B2Q9GZK3 357 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 TCEAL2Q9H3H9 227 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-201ENST00000359947 M0QYG6 137 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 TRIM23P36406 574 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 MLLT11Q13015 90 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-201ENST00000359947 CLINT1Q14677 625 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 SYT11Q9BT88 431 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 C19orf12Q9NSK7 152 aa14.27□□□□□ -0.13
PTPRF-201ENST00000359947 N4BP2Q86UW6 1770 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 OR8U8P0C7N1 319 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 CHATP28329 748 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 LRRC28Q86X40 367 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 OR7G2Q8NG99 324 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 OR11G2Q8NGC1 345 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 MYEOVQ96EZ4 313 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 UPK1BO75841 260 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 MGST1P10620 155 aaKnown RBP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 GABRG2P18507 467 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 TEAD1P28347 426 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 OR8G2PQ6IF36 304 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 EGFL6Q8IUX8 553 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 OR51H1Q8NH63 302 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 OR10J5Q8NHC4 309 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 ASH2LQ9UBL3 628 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 OSGIN1Q9UJX0 560 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 YBX2Q9Y2T7 364 aaKnown RBP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 CRYBA1P05813 215 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 POU2F2P09086 479 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 RPL27P61353 136 aaKnown RBP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 CA5BP1Q8WTZ4 195 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 TAAR9Q96RI9 348 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 NIPSNAP1Q9BPW8 284 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 OR10J4P0C629 311 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 TCTN3Q6NUS6 607 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 NAXDQ8IW45 347 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 LSMEM2Q8N112 164 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 GIMAP1Q8WWP7 306 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 NRIP3Q9NQ35 241 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 PUS1Q9Y606 427 aaKnown RBP eCLIP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 P2RX6O15547 441 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 APOA2P02652 100 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 RPL35P42766 123 aaKnown RBP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 NCCRP1Q6ZVX7 275 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 CYP4V2Q6ZWL3 525 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 CNOT2Q9NZN8 540 aaKnown RBP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 ECM29Q5VYK3 1845 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 MED6O75586 246 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 TAS2R30P59541 319 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 MFGE8Q08431 387 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 NKAIN4Q8IVV8 208 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 SLCO4A1Q96BD0 722 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 LRRC61Q9BV99 259 aa14.26□□□□□ -0.13
PTPRF-201ENST00000359947 RIMS4Q9H426 269 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-201ENST00000359947 OLFM2O95897 454 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 IL9P15248 144 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 YOD1Q5VVQ6 348 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-201ENST00000359947 C1orf123Q9NWV4 160 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 CCDC187A0A096LP49 1063 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 OR6C65A6NJZ3 312 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 SORDQ00796 357 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 UBTD2Q8WUN7 234 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 FZR1Q9UM11 496 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 ANKRD61A6NGH8 418 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 C17orf112F2Z3M2 114 aa14.25□□□□□ -0.13
PTPRF-201ENST00000359947 K7EPK0 472 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms