RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 SOCS7O14512 581 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SCAMP2O15127 329 aaKnown RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 HOXC11O43248 304 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SEMA7AO75326 666 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 GLUD1P00367 558 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 FUCA1P04066 466 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 IRF1P10914 325 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 TYRP1P17643 537 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 GSK3AP49840 483 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 GRASPQ7Z6J2 395 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 OR6N2Q8NGY6 317 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 OR5B3Q8NH48 314 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SLC25A44Q96H78 314 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 PITX2Q99697 317 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 Q9N2K0 584 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 PLCH1Q4KWH8 1693 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SOWAHBA6NEL2 793 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SOX14O95416 240 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SFTA3P0C7M3 94 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SMIM17P0DL12 118 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF8P17098 575 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 FGF9P31371 208 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 UGCGQ16739 394 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SFRP5Q5T4F7 317 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 MISPQ8IVT2 679 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 OR2G2Q8NGZ5 317 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 OR2T10Q8NGZ9 312 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 AKIP1Q9NQ31 210 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 LHX6Q9UPM6 363 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 OR5K3A6NET4 321 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 UNCXA6NJT0 531 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 GRXCR1A8MXD5 290 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 KLF7O75840 302 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 GJA5P36382 358 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SGSHP51688 502 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 PNLIPRP2P54317 469 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 EGR3Q06889 387 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 FRMPD2BQ6IN97 320 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 PPTC7Q8NI37 304 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 IGSF8Q969P0 613 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SLCO4A1Q96BD0 722 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 CITED2Q99967 270 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 CHST6Q9GZX3 395 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 CBLCQ9ULV8 474 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 RPH3ALQ9UNE2 315 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 DOK2O60496 412 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 CSTAP01040 98 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 AHSGP02765 367 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 EN2P19622 333 aaPredicted RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 SSTR2P30874 369 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 ACVR1BP36896 505 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 IAH1Q2TAA2 248 aaPredicted RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 RNLSQ5VYX0 342 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 SIAH3Q8IW03 269 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 OR5K2Q8NHB8 316 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 SH3RF2Q8TEC5 729 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 C11orf84Q9BUA3 381 aaPredicted RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 SRMSQ9H3Y6 488 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 CORINQ9Y5Q5 1042 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 LOC102723532A0A0G2JNH3 316 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 OTOL1A6NHN0 477 aaPredicted RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 NPIPB15A6NHN6 443 aaPredicted RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 FAM227AF5H4B4 570 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 PCCBP05166 539 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 APEX1P27695 318 aaKnown RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 IDUAP35475 653 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 ATP1B3P54709 279 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 CTBSQ01459 385 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 DGKZQ13574 1117 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM88Q6PEY1 159 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 PAQR3Q6TCH7 311 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 TGIF2LXQ8IUE1 241 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 FAM71CQ8NEG0 241 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 OR6N1Q8NGY5 312 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 MGST2Q99735 147 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM9BQ9NQ34 198 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 GDF2Q9UK05 429 aaPredicted RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 B3GALT5Q9Y2C3 310 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 CEBPZOSA8MTT3 80 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 HIDE1A8MVS5 230 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 NDUFS4O43181 175 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 SHMT2P34897 504 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 CCR2P41597 374 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 HTR5AP47898 357 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 WNT7BP56706 349 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 SIRPAP78324 504 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 SLC35A1P78382 337 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 TSPAN31Q12999 210 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 KCNAB1Q14722 419 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF805Q5CZA5 627 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 ALKBH2Q6NS38 261 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 CMTM4Q8IZR5 234 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 OR2A1Q8NGT9 310 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 NTMT1Q9BV86 223 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 MARCH5Q9NX47 278 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 B3GALT1Q9Y5Z6 326 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 ALS2Q96Q42 1657 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 NWD2Q9ULI1 1742 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 HELTA6NFD8 242 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 FIGNL2A6NMB9 653 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms